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Os02g0190900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phytoene dehydrogenase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0195) R2 : 0.00453
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0592 (0.0411) R2dN8 : 0.00585 R2N8 : 0.00453
σ : 0.368
deviance : 62.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.67 0.264 11.4 -0.576 0.457 -0.422 0.211 -0.233 -0.19 23.2 49.8 4068 -- --
31.72 0.262 11.4 -0.565 0.468 -0.485 0.22 -- -0.194 23.2 49.02 4116 -- --
31.84 0.263 11.4 -0.581 0.454 -0.427 -- -0.176 -0.191 23.2 49.68 4156 -- --
31.86 0.263 11.4 -0.569 0.459 -0.479 -- -- -0.197 23.2 49 4159 -- --
42.91 0.305 11.4 -0.641 -- -0.499 -- -0.0368 -0.163 -- 49 7285 -- --
36.1 0.282 11.4 -0.753 0.426 -- 0.107 -- -0.145 23.1 -- -- -- --
36.15 0.282 11.4 -0.757 0.425 -- -- -- -0.146 23.1 -- -- -- --
42.84 0.305 11.4 -0.588 -- -0.53 -- -- -0.146 -- 49 7285 -- --
38.7 0.29 11.4 -- 0.456 -0.761 -- -- -0.15 23.2 48.21 4204 -- --
47.42 0.322 11.4 -0.747 -- -- -- -- -0.142 -- -- -- -- --
51.27 0.335 11.4 -- 0.418 -- -- -- -0.0614 23 -- -- -- --
51.22 0.333 11.4 -- -- -0.682 -- -- -0.14 -- 48.99 4364 -- --
62.15 0.368 11.4 -- -- -- -- -- -0.0592 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.89 temperature 10.0 270 > th dose dependent rect. 18 9
5 27.40 temperature 15.0 10 > th dose dependent rect. 20 9
32 28.47 temperature 20.0 90 > th dose independent rect. 20 8
35 28.49 temperature 10.0 90 > th dose dependent rect. 8 20
40 28.58 temperature 10.0 10 > th dose dependent rect. 8 21
51 28.76 temperature 20.0 90 > th dose independent rect. 8 20
104 29.56 temperature 10.0 270 > th dose dependent rect. 17 21
109 29.62 temperature 30.0 270 < th dose dependent rect. 14 17
117 29.78 temperature 15.0 270 > th dose dependent rect. 18 19
200 30.40 wind 9.0 14400 < th dose independent sin 6 NA
212 30.44 temperature 10.0 43200 > th dose independent rect. 10 7
218 30.46 temperature 25.0 270 < th dose independent rect. 15 17
228 30.49 wind 9.0 14400 > th dose independent sin 6 NA
232 30.50 wind 9.0 14400 < th dose independent rect. 2 11
233 30.50 wind 9.0 14400 > th dose independent rect. 23 14
237 30.51 wind 9.0 14400 > th dose dependent rect. 4 9
244 30.53 wind 9.0 14400 > th dose dependent sin 6 NA
246 30.54 wind 9.0 14400 > th dose independent rect. 3 10
258 30.57 wind 9.0 14400 < th dose independent rect. 23 14
265 30.59 wind 9.0 14400 > th dose independent rect. 20 18
282 30.63 atmosphere 1010.0 10 < th dose independent rect. 20 9
286 30.64 atmosphere 1015.0 270 < th dose independent rect. 18 9
306 30.69 wind 9.0 14400 < th dose independent rect. 20 18
314 30.72 radiation 1.0 90 < th dose dependent sin 11 NA
325 30.75 temperature 25.0 270 > th dose independent rect. 17 21
331 30.77 wind 9.0 14400 < th dose independent rect. 22 16
350 30.80 wind 7.0 270 < th dose independent rect. 17 10
354 30.80 atmosphere 1015.0 90 < th dose independent rect. 8 21
356 30.81 temperature 10.0 43200 > th dose independent rect. 10 5
362 30.82 wind 9.0 43200 > th dose independent rect. 10 4
364 30.82 radiation 1.0 30 > th dose independent rect. 18 14
378 30.83 atmosphere 1015.0 10 < th dose dependent rect. 9 20
382 30.84 atmosphere 1015.0 10 < th dose independent rect. 9 20
394 30.85 wind 9.0 14400 > th dose dependent rect. 20 18
406 30.89 radiation 1.0 90 < th dose independent sin 12 NA
412 30.90 wind 9.0 43200 > th dose independent rect. 9 7
426 30.92 radiation 1.0 30 > th dose independent rect. 16 17
438 30.95 radiation 10.0 270 < th dose independent rect. 17 10
469 30.98 atmosphere 1015.0 270 < th dose independent rect. 6 22
481 30.99 wind 9.0 14400 > th dose dependent rect. 18 21
486 31.00 wind 9.0 14400 < th dose independent rect. 18 22
487 31.01 radiation 1.0 90 > th dose independent sin 12 NA
539 31.08 wind 3.0 43200 > th dose independent rect. 1 2
549 31.09 wind 9.0 43200 < th dose independent rect. 10 4
564 31.11 wind 9.0 43200 < th dose independent rect. 9 7
605 31.17 temperature 15.0 10 > th dose dependent rect. 20 20
621 31.20 humidity 50.0 14400 > th dose independent rect. 19 10
622 31.20 wind 9.0 43200 > th dose independent rect. 4 13
624 31.20 precipitation 0.1 270 < th dose independent rect. 3 14
625 31.20 precipitation 0.1 270 < th dose dependent rect. 3 14
641 31.22 humidity 60.0 270 > th dose independent rect. 17 10
657 31.24 temperature 25.0 14400 > th dose independent rect. 11 1
658 31.24 radiation 1.0 30 > th dose independent rect. 5 3
666 31.24 wind 5.0 90 < th dose independent rect. 19 10
685 31.25 wind 9.0 14400 > th dose dependent rect. 22 16
704 31.26 wind 9.0 14400 > th dose independent rect. 15 23
708 31.27 temperature 25.0 720 > th dose independent rect. 17 2
711 31.27 radiation 20.0 270 < th dose dependent rect. 17 10
723 31.28 temperature 20.0 90 > th dose independent rect. 20 18
724 31.28 atmosphere 1015.0 90 < th dose dependent rect. 8 7
729 31.28 radiation 1.0 90 < th dose dependent rect. 19 19
737 31.29 wind 7.0 43200 > th dose dependent rect. 10 4
753 31.30 wind 9.0 43200 > th dose dependent rect. 10 7
759 31.31 atmosphere 1010.0 14400 < th dose independent rect. 14 1
763 31.31 precipitation 0.1 270 < th dose independent rect. 17 10
768 31.31 wind 9.0 14400 < th dose independent rect. 15 23
769 31.31 precipitation 0.1 270 < th dose dependent rect. 17 10
799 31.34 temperature 25.0 14400 < th dose independent rect. 11 1
821 31.35 radiation 30.0 43200 < th dose independent rect. 11 1
826 31.35 wind 9.0 14400 < th dose independent rect. 2 18
838 31.36 atmosphere 1010.0 14400 > th dose independent rect. 13 1
866 31.37 temperature 30.0 90 < th dose independent rect. 18 11
867 31.37 temperature 10.0 270 > th dose independent rect. 3 14
868 31.37 atmosphere 1015.0 270 < th dose independent rect. 3 14
873 31.37 radiation 1.0 90 < th dose dependent rect. 19 11
875 31.37 wind 9.0 90 < th dose dependent rect. 8 20
883 31.38 humidity 70.0 43200 > th dose independent rect. 22 11
919 31.40 wind 9.0 14400 > th dose dependent rect. 21 23
920 31.41 wind 9.0 14400 > th dose independent no NA NA
940 31.41 wind 9.0 14400 > th dose independent rect. 3 22
944 31.41 wind 9.0 14400 > th dose independent rect. 9 23
959 31.42 wind 9.0 14400 > th dose independent rect. 3 20
960 31.42 wind 9.0 14400 < th dose independent rect. 3 20
972 31.42 wind 9.0 14400 > th dose independent rect. 22 23
976 31.42 temperature 20.0 720 > th dose dependent rect. 17 1
981 31.42 radiation 1.0 90 < th dose dependent rect. 19 16
985 31.43 wind 9.0 14400 < th dose independent no NA NA