BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0190900 Os02g0190900|AK111037
         (121 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49550.1  | chr5:20106702-20107156 REVERSE LENGTH=128          137   1e-33

>AT5G49550.1 | chr5:20106702-20107156 REVERSE LENGTH=128
          Length = 127

 Score =  137 bits (345), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 88/107 (82%)

Query: 9   RDELADSLAELFTNVSLMVRGELQGTNSQLSLLEKMNRRVAEEYNNYGDVASGLRVFVEQ 68
           RD+LA+SL  LFT+VS MV+ ELQGTN+ L LLEKMN RVA EY++ GDVA+GLRVF EQ
Sbjct: 5   RDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAEQ 64

Query: 69  LNEKNQSFGEYVSQIDAIDQQVTEFEAVVSMLDKHVSLLEKKVKSAY 115
           +  K+    E+V Q+DAI++QV+EFEAV+S+LD++VS+LE K+++ Y
Sbjct: 65  MKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEY 111



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.126    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,084,931
Number of extensions: 68217
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 35
Effective length of database: 8,748,793
Effective search space: 306207755
Effective search space used: 306207755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 105 (45.1 bits)