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Os02g0187500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0047 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0144) R2 : 0.687
β1 : -0.896 (0.0538) R2dD : 0.21 R2D : 0.0773
β2 : 0.876 (0.0373) R2dC : 0.389 R2C : 0.275
β3 : 1.48 (0.0715) R2dE : 0.343 R2E : 0.0995
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.186 (0.0319) R2dN8 : 0.0345 R2N8 : -0.0568
σ : 0.266
deviance : 32.7
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C
peak time of C : 7.11
E
wheather : temperature
threshold : 11.54
memory length : 12
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.46 0.259 12.1 -0.728 0.875 1.45 0.567 1.28 -0.134 7.19 10.28 10 -- --
31.78 0.263 12.2 -0.902 0.866 1.44 0.617 -- -0.178 7.32 12.3 12 -- --
31.28 0.261 12.1 -0.713 0.879 1.46 -- 1.31 -0.136 7.09 9.904 9 -- --
32.7 0.266 12.2 -0.896 0.876 1.48 -- -- -0.186 7.11 11.54 12 -- --
70.62 0.394 12.2 -0.687 -- 1.24 -- 1.06 -0.0967 -- 13.11 6 -- --
51.17 0.335 12.1 -0.634 0.837 -- 0.852 -- 0.0245 9.2 -- -- -- --
53.65 0.343 12.1 -0.605 0.839 -- -- -- 0.0242 9 -- -- -- --
71.43 0.394 12.2 -0.834 -- 1.25 -- -- -0.138 -- 8.496 2 -- --
51.73 0.337 12.1 -- 0.83 1.04 -- -- -0.0327 7.7 12.31 19 -- --
94.08 0.453 12.1 -0.607 -- -- -- -- 0.0295 -- -- -- -- --
63.31 0.372 12.1 -- 0.838 -- -- -- 0.0917 9.06 -- -- -- --
88.74 0.439 12.1 -- -- 0.993 -- -- -0.0161 -- 12.16 2 -- --
103.79 0.476 12.1 -- -- -- -- -- 0.0968 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.79 temperature 30 270 < th dose dependent rect. 23 20
2 28.81 temperature 30 270 < th dose dependent rect. 23 22
5 29.03 temperature 15 270 > th dose dependent rect. 17 22
9 29.29 temperature 15 90 > th dose dependent sin 4 NA
25 29.76 temperature 10 270 > th dose dependent rect. 4 22
37 30.21 temperature 30 10 < th dose dependent rect. 9 23
40 30.27 temperature 15 270 > th dose dependent sin 6 NA
44 30.36 temperature 30 270 < th dose dependent rect. 1 17
52 30.40 temperature 30 10 < th dose dependent rect. 11 23
58 30.47 temperature 10 10 > th dose dependent no NA NA
60 30.50 temperature 30 30 < th dose dependent sin 3 NA
64 30.52 temperature 30 10 < th dose dependent rect. 15 23
70 30.53 temperature 30 10 < th dose dependent no NA NA
73 30.54 temperature 20 10 > th dose dependent rect. 6 22
75 30.61 temperature 30 30 < th dose dependent rect. 13 23
91 30.74 temperature 15 10 > th dose dependent rect. 21 23
111 30.91 temperature 20 10 > th dose dependent rect. 6 20
128 31.05 temperature 30 10 < th dose dependent rect. 1 23
142 31.18 temperature 30 10 < th dose dependent rect. 17 23
152 31.27 temperature 30 10 < th dose dependent rect. 23 23
175 31.50 temperature 30 10 < th dose dependent rect. 7 23
180 31.52 temperature 30 10 < th dose dependent rect. 19 23
227 31.76 temperature 30 90 < th dose dependent rect. 3 16
231 31.77 temperature 30 10 < th dose dependent rect. 3 23
253 31.89 temperature 20 10 > th dose dependent rect. 1 23
254 31.89 temperature 20 10 > th dose dependent rect. 3 23
269 31.98 temperature 30 10 < th dose dependent rect. 21 23
341 32.27 temperature 20 10 > th dose dependent rect. 23 23
342 32.28 temperature 20 10 > th dose dependent rect. 21 19
348 32.29 temperature 10 720 > th dose dependent rect. 20 15
359 32.34 temperature 20 10 > th dose dependent rect. 21 21
362 32.36 temperature 25 720 < th dose dependent no NA NA
363 32.37 temperature 25 720 < th dose dependent rect. 15 23
384 32.46 temperature 25 720 < th dose dependent rect. 13 23
396 32.50 temperature 20 10 > th dose dependent rect. 17 23
406 32.54 temperature 15 720 > th dose dependent rect. 20 13
418 32.59 temperature 25 720 < th dose dependent rect. 4 23
441 32.65 temperature 25 720 < th dose dependent rect. 8 23
458 32.70 temperature 25 720 < th dose dependent rect. 6 23
480 32.80 temperature 25 720 < th dose dependent sin 2 NA
498 32.86 temperature 20 10 > th dose dependent rect. 23 17
724 33.58 temperature 25 1440 < th dose dependent rect. 21 1
736 33.62 temperature 10 720 > th dose dependent rect. 21 18
811 33.83 temperature 25 1440 < th dose dependent rect. 19 5
815 33.84 temperature 25 1440 < th dose dependent rect. 17 7
845 33.89 temperature 30 10 < th dose dependent rect. 4 15
902 34.03 temperature 15 270 > th dose dependent rect. 4 11
905 34.03 temperature 25 1440 < th dose dependent rect. 11 15
911 34.04 temperature 30 10 < th dose dependent rect. 4 17
945 34.12 temperature 25 1440 < th dose dependent rect. 13 13
949 34.13 temperature 25 1440 < th dose dependent sin 17 NA
991 34.18 temperature 20 10 > th dose dependent rect. 15 23