BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0187500 Os02g0187500|AK069039
         (144 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21065.1  | chr1:7374210-7375644 FORWARD LENGTH=218            257   2e-69

>AT1G21065.1 | chr1:7374210-7375644 FORWARD LENGTH=218
          Length = 217

 Score =  257 bits (656), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 128/143 (89%)

Query: 2   AAKWAQKTIVIPAQRRGCHLITPKILREIEGDLSGFKCGLAHLFLQHTSASLTINENYDS 61
            AKWAQKTI +P  RRGCHLITPKIL+EI  DLS F CGLAH+FLQHTSASLTINENYD 
Sbjct: 75  GAKWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDP 134

Query: 62  DVQADTETFLNRIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCALTIPITDGHLNMGTWQ 121
           DVQADTETFLNRIVPEG SAPW+HT+EGPDDMPAHIKSSMFGC LTIPIT G L+MGTWQ
Sbjct: 135 DVQADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLSMGTWQ 194

Query: 122 GIWLCEHRDNASSRKIVITLNGV 144
           GIWLCEHRD  ++R++V+TLNG+
Sbjct: 195 GIWLCEHRDAPTARRVVVTLNGI 217



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,245,271
Number of extensions: 124700
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 55
Effective length of database: 8,666,545
Effective search space: 476659975
Effective search space used: 476659975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)