Os02g0186400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spectrin repeat containing protein.
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Os02g0186400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spectrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.51 | 0.34 | 12.8 | 0.195 | 0.986 | -1.16 | 0.708 | 2.57 | -0.115 | 3.57 | 3.238 | 855 | -- | -- |
| 55.88 | 0.348 | 12.8 | 0.207 | 1.13 | -1.68 | 2.18 | -- | -0.158 | 5 | 2.06 | 936 | -- | -- |
| 53.24 | 0.34 | 12.8 | 0.176 | 1.07 | -1.18 | -- | 3.29 | -0.115 | 3.46 | 3.266 | 804 | -- | -- |
| 66.09 | 0.379 | 12.8 | 0.242 | 0.938 | -1.32 | -- | -- | -0.114 | 4.24 | 1.674 | 938 | -- | -- |
| 75.93 | 0.406 | 12.8 | 0.0688 | -- | -1.12 | -- | 1.76 | -0.188 | -- | 3.029 | 1217 | -- | -- |
| 69.41 | 0.391 | 12.8 | 0.386 | 0.756 | -- | 0.354 | -- | -0.0318 | 0.266 | -- | -- | -- | -- |
| 69.86 | 0.391 | 12.8 | 0.373 | 0.756 | -- | -- | -- | -0.0326 | 0.053 | -- | -- | -- | -- |
| 71.23 | 0.395 | 12.8 | 0.425 | -- | 0.564 | -- | -- | -0.00117 | -- | 0.17 | 1231 | -- | -- |
| 67.58 | 0.383 | 12.8 | -- | 1.01 | -1.5 | -- | -- | -0.148 | 4.58 | 1.344 | 942 | -- | -- |
| 105.83 | 0.481 | 12.8 | 0.397 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 73.52 | 0.401 | 12.8 | -- | 0.761 | -- | -- | -- | -0.0741 | 0.0805 | -- | -- | -- | -- |
| 75.99 | 0.407 | 12.8 | -- | -- | 0.559 | -- | -- | -0.0485 | -- | 0.17 | 1228 | -- | -- |
| 109.98 | 0.489 | 12.8 | -- | -- | -- | -- | -- | -0.0658 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.73 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 17 |
| 5 | 48.79 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 8 | 48.98 | radiation | 1.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 13 | 49.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 15 | 49.31 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 13 |
| 19 | 49.51 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 21 | 49.52 | radiation | 1.0 | 270 | < th | dose independent | sin | 5 | NA |
| 31 | 49.97 | humidity | 70.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 37 | 50.05 | humidity | 50.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 42 | 50.11 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 11 |
| 47 | 50.13 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 58 | 50.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 63 | 50.27 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 85 | 50.40 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 97 | 50.45 | humidity | 80.0 | 90 | > th | dose independent | rect. | 1 | 14 |
| 182 | 51.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 184 | 51.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 190 | 51.24 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 216 | 51.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 16 |
| 219 | 51.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 220 | 51.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 235 | 51.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 236 | 51.49 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 240 | 51.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 241 | 51.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 243 | 51.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 244 | 51.51 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 253 | 51.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 272 | 51.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 296 | 51.76 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 299 | 51.77 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 17 |
| 351 | 51.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 355 | 51.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 360 | 51.97 | humidity | 70.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 361 | 51.97 | radiation | 20.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 369 | 52.00 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 373 | 52.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 374 | 52.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 375 | 52.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 376 | 52.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 378 | 52.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 402 | 52.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 405 | 52.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 408 | 52.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 420 | 52.14 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 435 | 52.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 478 | 52.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 8 |
| 481 | 52.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 490 | 52.30 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 579 | 52.54 | humidity | 80.0 | 90 | > th | dose independent | sin | 5 | NA |
| 613 | 52.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 654 | 52.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 659 | 52.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 660 | 52.70 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 712 | 52.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 786 | 52.90 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 792 | 52.91 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 811 | 52.94 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 875 | 53.05 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 17 |
| 916 | 53.11 | radiation | 40.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 942 | 53.15 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 2 | 8 |