Os02g0179900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Negative elongation factor E (NELF-E) (RD protein). Splice isoform 2.
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Os02g0179900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Negative elongation factor E (NELF-E) (RD protein). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.92 | 0.181 | 11.8 | -0.00374 | 0.43 | 0.682 | -0.351 | 1.13 | 0.132 | 12.8 | 11.82 | 100 | -- | -- |
| 15.3 | 0.182 | 11.8 | -0.141 | 0.432 | 0.57 | -0.176 | -- | 0.0915 | 12.6 | 20.4 | 130 | -- | -- |
| 15.32 | 0.182 | 11.8 | -0.0505 | 0.415 | 0.629 | -- | 0.622 | 0.119 | 12.9 | 16.54 | 99 | -- | -- |
| 15.38 | 0.183 | 11.8 | -0.156 | 0.436 | 0.553 | -- | -- | 0.0909 | 12.8 | 20.18 | 121 | -- | -- |
| 22.64 | 0.223 | 11.8 | -0.186 | -- | 1.05 | -- | 0.509 | 0.036 | -- | 16.54 | 99 | -- | -- |
| 20.24 | 0.211 | 11.8 | -0.0321 | 0.61 | -- | 0.00909 | -- | 0.184 | 13.7 | -- | -- | -- | -- |
| 20.25 | 0.211 | 11.8 | -0.0318 | 0.61 | -- | -- | -- | 0.184 | 13.7 | -- | -- | -- | -- |
| 22.38 | 0.22 | 11.9 | -0.243 | -- | 0.945 | -- | -- | 0.0166 | -- | 20.06 | 12 | -- | -- |
| 15.96 | 0.186 | 11.8 | -- | 0.449 | 0.505 | -- | -- | 0.115 | 12.8 | 20.6 | 129 | -- | -- |
| 42.94 | 0.306 | 11.8 | -0.0565 | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
| 20.27 | 0.211 | 11.8 | -- | 0.611 | -- | -- | -- | 0.188 | 13.7 | -- | -- | -- | -- |
| 23.82 | 0.227 | 11.8 | -- | -- | 0.887 | -- | -- | 0.0529 | -- | 20.61 | 10 | -- | -- |
| 43.03 | 0.306 | 11.8 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.23 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 3 | 14.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 21 | 14.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 25 | 14.62 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 26 | 14.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 28 | 14.65 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 34 | 14.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 38 | 14.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 59 | 14.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 68 | 14.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 70 | 14.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 72 | 14.78 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 74 | 14.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 79 | 14.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 80 | 14.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 82 | 14.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 94 | 14.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 154 | 14.92 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 173 | 14.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 174 | 14.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 186 | 14.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 203 | 14.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 210 | 14.97 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 235 | 15.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 249 | 15.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 296 | 15.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 309 | 15.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 317 | 15.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 318 | 15.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 324 | 15.11 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 418 | 15.20 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 440 | 15.22 | temperature | 20 | 90 | > th | dose dependent | sin | 21 | NA |
| 457 | 15.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 560 | 15.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 630 | 15.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 704 | 15.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 706 | 15.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 710 | 15.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 840 | 15.51 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 871 | 15.53 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 13 |
| 957 | 15.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 992 | 15.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 3 |