Os02g0179400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0179400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.12 | 0.497 | 3.07 | 0.368 | 0.511 | 0.0353 | -0.471 | 2.5 | -0.0905 | 23.6 | 30.05 | 2923 | -- | -- |
| 112.94 | 0.495 | 3.12 | -0.0927 | 0.504 | 0.346 | -0.3 | -- | -0.0901 | 23.1 | 30.4 | 2902 | -- | -- |
| 112.82 | 0.495 | 3.06 | 0.378 | 0.511 | 0.00952 | -- | 2.76 | -0.1 | 23.6 | 30.7 | 2868 | -- | -- |
| 113.53 | 0.496 | 3.12 | -0.0832 | 0.506 | 0.319 | -- | -- | -0.0897 | 23.5 | 30.4 | 2911 | -- | -- |
| 129.12 | 0.529 | 3.06 | 0.375 | -- | 0.0665 | -- | 2.73 | -0.0901 | -- | 30.8 | 2826 | -- | -- |
| 117.48 | 0.508 | 3.14 | -0.0231 | 0.536 | -- | -0.408 | -- | -0.167 | 23.7 | -- | -- | -- | -- |
| 118.2 | 0.509 | 3.14 | -0.00689 | 0.537 | -- | -- | -- | -0.165 | 23.8 | -- | -- | -- | -- |
| 129.11 | 0.529 | 3.11 | -0.099 | -- | 0.442 | -- | -- | -0.1 | -- | 29.89 | 2555 | -- | -- |
| 113.73 | 0.497 | 3.12 | -- | 0.51 | 0.314 | -- | -- | -0.0881 | 23.7 | 30.33 | 2902 | -- | -- |
| 136.38 | 0.546 | 3.13 | 0.00886 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 118.2 | 0.509 | 3.14 | -- | 0.537 | -- | -- | -- | -0.165 | 23.8 | -- | -- | -- | -- |
| 129.28 | 0.53 | 3.13 | -- | -- | 0.395 | -- | -- | -0.16 | -- | 29.4 | 2488 | -- | -- |
| 136.38 | 0.545 | 3.13 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.19 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 2 | 97.58 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 16 | 97.71 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 60 | 97.90 | temperature | 30.0 | 90 | > th | dose independent | rect. | 18 | 16 |
| 212 | 104.20 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 7 | 3 |
| 214 | 104.89 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 219 | 105.45 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 226 | 105.63 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 282 | 107.68 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 7 | 3 |
| 287 | 108.08 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 7 | 4 |
| 289 | 108.14 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 295 | 108.25 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 320 | 108.48 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 343 | 108.96 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 362 | 109.09 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 401 | 110.00 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 410 | 110.08 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 7 | 2 |
| 411 | 110.09 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 2 | 9 |
| 430 | 110.23 | temperature | 30.0 | 90 | > th | dose independent | sin | 9 | NA |
| 432 | 110.25 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 455 | 110.48 | wind | 1.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 475 | 110.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 480 | 110.72 | wind | 1.0 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 497 | 110.80 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 14 |
| 508 | 110.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 512 | 110.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 515 | 110.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 535 | 111.02 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 23 | 4 |
| 543 | 111.07 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 22 | 6 |
| 557 | 111.15 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 565 | 111.19 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 566 | 111.19 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 576 | 111.21 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 581 | 111.23 | atmosphere | 1000.0 | 720 | < th | dose independent | sin | 9 | NA |
| 597 | 111.28 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 5 | NA |
| 649 | 111.40 | temperature | 20.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 650 | 111.40 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 671 | 111.43 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 673 | 111.43 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 686 | 111.47 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 19 | 16 |
| 693 | 111.48 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 696 | 111.49 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 700 | 111.51 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 702 | 111.51 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 707 | 111.52 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 727 | 111.56 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 733 | 111.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 734 | 111.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 738 | 111.58 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 742 | 111.59 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 744 | 111.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 745 | 111.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 751 | 111.59 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 799 | 111.62 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 803 | 111.62 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 827 | 111.64 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 828 | 111.64 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 829 | 111.64 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 835 | 111.65 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 843 | 111.66 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 857 | 111.67 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 884 | 111.68 | temperature | 30.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 885 | 111.68 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 887 | 111.68 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 888 | 111.68 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 891 | 111.68 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 894 | 111.68 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 900 | 111.68 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 913 | 111.69 | temperature | 30.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 925 | 111.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 934 | 111.70 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 936 | 111.70 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 941 | 111.71 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 995 | 111.73 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 3 |