BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0179400 Os02g0179400|Os02g0179400
(427 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16070.2 | chr1:5511899-5513779 REVERSE LENGTH=399 337 9e-93
AT2G18280.1 | chr2:7946754-7948176 FORWARD LENGTH=395 75 9e-14
AT1G47270.1 | chr1:17326828-17328564 FORWARD LENGTH=414 67 1e-11
AT1G76900.1 | chr1:28882741-28884377 FORWARD LENGTH=456 61 1e-09
AT1G25280.1 | chr1:8864961-8866608 FORWARD LENGTH=446 61 1e-09
AT2G47900.3 | chr2:19611196-19612766 REVERSE LENGTH=408 60 2e-09
AT5G18680.1 | chr5:6228358-6230426 REVERSE LENGTH=390 60 3e-09
AT3G06380.1 | chr3:1936384-1938028 FORWARD LENGTH=381 59 7e-09
AT1G53320.1 | chr1:19891237-19893429 REVERSE LENGTH=380 55 1e-07
AT1G43640.1 | chr1:16439619-16441253 REVERSE LENGTH=430 54 2e-07
>AT1G16070.2 | chr1:5511899-5513779 REVERSE LENGTH=399
Length = 398
Score = 337 bits (863), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 164/297 (55%), Positives = 214/297 (72%), Gaps = 15/297 (5%)
Query: 132 SSSYEAWDLSDNEAAPASSWATLPNRALLCRPLPLDVGRCTCIIAKETLXXXXXXXXXXX 191
SSS + W+ SD+EAAPASSW+TLPNRALLC+ LPLDVGRCTC+I KE
Sbjct: 116 SSSLKVWEFSDSEAAPASSWSTLPNRALLCKTLPLDVGRCTCLIVKE---QSPEGLSHGS 172
Query: 192 LYSLYTNEGQGRQDRKLAVAXXXXXXXXSEFVVAQNLDGIFCTSDKNFLGTLSSNLVGSR 251
+YSLYT+EG+GR+DRKLAVA S F VAQN+ G+ C+SD++++G++++NL+GS+
Sbjct: 173 VYSLYTHEGRGRKDRKLAVAYHSRRNGKSIFRVAQNVKGLLCSSDESYVGSMTANLLGSK 232
Query: 252 YRIWGQGNRVDEIKSQSKRLLGVVAFAPTVTTLTGSFRSMRAWIPKNQSIHLKNSNSAQA 311
Y IW +G RV + K LL VV F PT+TT TGS+R MR +PK Q + KN+N
Sbjct: 233 YYIWDKGVRVGSVGKMVKPLLSVVIFTPTITTWTGSYRRMRTLLPKQQPMQ-KNNNK--- 288
Query: 312 SEFPVVEIQHISGLPKDWQEKKIKADQLCSRSPFYNNMTKRYELDFRERAGRMGYKVQPS 371
++Q S LP DW E K K +LCSR P YN ++K++ELDFR+R GR G ++Q S
Sbjct: 289 ------QVQQASKLPLDWLENKEKIQKLCSRIPHYNKISKQHELDFRDR-GRTGLRIQSS 341
Query: 372 VKNFQMTL-EEKGRQTILQLGRIGKSKYIMDFRYPLTGYQALCICLASIDSKLCCTL 427
VKNFQ+TL +E RQTILQ+GR+ K++Y++DFRYP +GYQA CICLASIDSKLCCT+
Sbjct: 342 VKNFQLTLTQETPRQTILQMGRVDKARYVIDFRYPFSGYQAFCICLASIDSKLCCTV 398
>AT2G18280.1 | chr2:7946754-7948176 FORWARD LENGTH=395
Length = 394
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 46/268 (17%)
Query: 193 YSLYTNEGQGRQDRKLAVAXXXXXXXXSEFVVAQNLDGIFCTSDKNFLGTLSSNLVGSRY 252
Y L +E + D+ L A ++F+++ + F S ++G L S +G+++
Sbjct: 136 YGLMPSETEN--DKLLLAARRIRRATCTDFIISLSAKN-FSRSSSTYVGKLRSGFLGTKF 192
Query: 253 RIWGQGNRVDEIKSQSKRLLGVVAFAP-------TVTTLTGSFRSMRAWIPKNQSIHLKN 305
I+ ++Q R L AP TV +T +R P+ + +
Sbjct: 193 TIYDNQTASSTAQAQPNRRLHPKQAAPKLPTNSSTVGNITYELNVLRTRGPRRMHCAMDS 252
Query: 306 ----SNSAQASEFPVVEIQHISGLPKDWQEKKIKADQ---------------LCSRSPFY 346
S A+ S +E + +S P + + I D+ L ++SP +
Sbjct: 253 IPLSSVIAEPSVVQGIE-EEVSSSPSP-KGETITTDKEIPDNSPSLRDQPLVLKNKSPRW 310
Query: 347 NNMTKRYELDFRERAGRMGYKVQPSVKNFQMTLE---------EKGRQTILQLGRIGKSK 397
+ + + L+F+ GR+ SVKNFQ+ E E+ + ILQ G+IGK
Sbjct: 311 HEQLQCWCLNFK---GRVTVA---SVKNFQLVAEIDASLDAPPEEHERVILQFGKIGKDI 364
Query: 398 YIMDFRYPLTGYQALCICLASIDSKLCC 425
+ MD+RYPL+ +QA IC++S D+K C
Sbjct: 365 FTMDYRYPLSAFQAFAICISSFDTKPAC 392
>AT1G47270.1 | chr1:17326828-17328564 FORWARD LENGTH=414
Length = 413
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 45/270 (16%)
Query: 192 LYSLYTNEG---QGRQDRKLAVAXXXXXXXXSEFVVAQNLDGIFCTSDKNFLGTLSSNLV 248
+Y LY G + + L A +EFVV+ + + F S N++G L SN +
Sbjct: 152 IYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSGND-FSRSSSNYIGKLRSNFL 210
Query: 249 GSRYRIWGQG----NRVDEIKSQSKRLLGVVAFAPTVTTLTGSFRSMRAWIPKNQSIHLK 304
G+++ ++ NR Q + + + + ++ +R P+ +
Sbjct: 211 GTKFTVYENQPPPFNRKLPPSMQVSPWVSSSSSSYNIASILYELNVLRTRGPRRMQCIMH 270
Query: 305 NSNSAQASEFPVVEIQHISGLPKDWQEKKIKADQLCS-----------------RSPFYN 347
+ + E +IQ + ++KK CS +SP ++
Sbjct: 271 SIPISAIQEGG--KIQSPTEFTNQGKKKKKPLMDFCSGNLGGESVIKEPLILKNKSPRWH 328
Query: 348 NMTKRYELDFRERAGRMGYKVQPSVKNFQMTL------------EEKGRQTILQLGRIGK 395
+ + L+F+ R SVKNFQ+ EE+ + ILQ G+IGK
Sbjct: 329 EQLQCWCLNFKGRV------TVASVKNFQLVAAAAEAGKNMNIPEEEQDRVILQFGKIGK 382
Query: 396 SKYIMDFRYPLTGYQALCICLASIDSKLCC 425
+ MD+RYP++ +QA ICL+S D+K C
Sbjct: 383 DIFTMDYRYPISAFQAFAICLSSFDTKPVC 412
>AT1G76900.1 | chr1:28882741-28884377 FORWARD LENGTH=456
Length = 455
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 385 QTILQLGRIGKSKYIMDFRYPLTGYQALCICLASIDSKLCC 425
+ ILQ G++GK + MDFRYPL+ +QA ICL+S D+KL C
Sbjct: 414 KIILQFGKVGKDMFTMDFRYPLSAFQAFAICLSSFDTKLAC 454
>AT1G25280.1 | chr1:8864961-8866608 FORWARD LENGTH=446
Length = 445
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 26/116 (22%)
Query: 330 QEKKIKADQLCSRSPFYNNMTKRYELDFRERAGRMGYKVQPSVKNFQMTLEEKGR----- 384
+E + L ++ P ++ + + L+FR R SVKNFQ+ + +
Sbjct: 335 EEASFRPLILKNKQPRWHEQLQCWCLNFRGRV------TVASVKNFQLVAARQPQPQGTG 388
Query: 385 ---------------QTILQLGRIGKSKYIMDFRYPLTGYQALCICLASIDSKLCC 425
+ ILQ G++GK + MD+RYPL+ +QA ICL+S D+KL C
Sbjct: 389 AAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLAC 444
>AT2G47900.3 | chr2:19611196-19612766 REVERSE LENGTH=408
Length = 407
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 371 SVKNFQMTLE-EKG------RQTILQLGRIGKSKYIMDFRYPLTGYQALCICLASIDSKL 423
SVKNFQ+ E G ILQ G++GK + MD++YP++ +QA ICL+S D+K+
Sbjct: 345 SVKNFQLVAAPENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKI 404
Query: 424 CC 425
C
Sbjct: 405 AC 406
>AT5G18680.1 | chr5:6228358-6230426 REVERSE LENGTH=390
Length = 389
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 31/140 (22%)
Query: 308 SAQASEFPVVEIQHISGLPKDWQEKKIKADQ---------LCSRSPFYNNMTKRYELDFR 358
+++ SEFP++ + S L + Q K +++ L +++P ++ + + L+F
Sbjct: 258 ASEPSEFPLLGTR--STLSRS-QSKPLRSSSSHLKETPLVLSNKTPRWHEQLRCWCLNFH 314
Query: 359 ERAGRMGYKVQPSVKNFQ-------------MTLEEKGRQTILQLGRIGKSKYIMDFRYP 405
R SVKNFQ M+ E + + ILQ G++GK + MD+ YP
Sbjct: 315 GRV------TVASVKNFQLVAAGASCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGYP 368
Query: 406 LTGYQALCICLASIDSKLCC 425
++ +QA ICL+S ++++ C
Sbjct: 369 ISAFQAFAICLSSFETRIAC 388
>AT3G06380.1 | chr3:1936384-1938028 FORWARD LENGTH=381
Length = 380
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 339 LCSRSPFYNNMTKRYELDFRERAGRMGYKVQPSVKNFQMTLE------EKGRQTILQLGR 392
L +++P ++ + + L+F R SVKNFQ+ + + ILQ G+
Sbjct: 293 LSNKAPRWHEQLRCWCLNFHGRV------TVASVKNFQLVAVSDCEAGQTSERIILQFGK 346
Query: 393 IGKSKYIMDFRYPLTGYQALCICLASIDSKLCC 425
+GK + MD+ YP++ +QA ICL+S ++++ C
Sbjct: 347 VGKDMFTMDYGYPISAFQAFAICLSSFETRIAC 379
>AT1G53320.1 | chr1:19891237-19893429 REVERSE LENGTH=380
Length = 379
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 371 SVKNFQM--TLEE-----KGRQ--TILQLGRIGKSKYIMDFRYPLTGYQALCICLASIDS 421
SVKNFQ+ T+++ KG + +LQ G++G + MD+R PL+ +QA ICL S +
Sbjct: 315 SVKNFQLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGT 374
Query: 422 KLCC 425
KL C
Sbjct: 375 KLAC 378
>AT1G43640.1 | chr1:16439619-16441253 REVERSE LENGTH=430
Length = 429
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 385 QTILQLGRIGKSKYIMDFRYPLTGYQALCICLASIDSKLCC 425
+ IL G++GK + MD+RYPL+ +QA I L++ D+KL C
Sbjct: 388 KIILHFGKVGKDMFTMDYRYPLSAFQAFAISLSTFDTKLAC 428
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,456,246
Number of extensions: 264579
Number of successful extensions: 490
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 10
Length of query: 427
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 326
Effective length of database: 8,337,553
Effective search space: 2718042278
Effective search space used: 2718042278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)