Os02g0178400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein transport protein SEC61 gamma subunit.
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Os02g0178400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein transport protein SEC61 gamma subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.63 | 0.314 | 12.6 | 0.811 | 0.456 | -0.644 | 0.258 | -0.278 | 0.308 | 23.5 | 25.9 | 1198 | -- | -- |
| 44.67 | 0.311 | 12.6 | 0.868 | 0.472 | -0.65 | 0.256 | -- | 0.31 | 23.4 | 26 | 1133 | -- | -- |
| 44.88 | 0.312 | 12.6 | 0.849 | 0.464 | -0.664 | -- | -0.1 | 0.322 | 23.5 | 26 | 1180 | -- | -- |
| 44.88 | 0.312 | 12.6 | 0.866 | 0.475 | -0.666 | -- | -- | 0.329 | 23.5 | 25.92 | 1138 | -- | -- |
| 53.6 | 0.341 | 12.6 | 0.84 | -- | -0.551 | -- | -0.125 | 0.315 | -- | 25.8 | 1532 | -- | -- |
| 56.25 | 0.352 | 12.7 | 0.68 | 0.337 | -- | 0.19 | -- | 0.131 | 22.9 | -- | -- | -- | -- |
| 56.39 | 0.352 | 12.7 | 0.671 | 0.336 | -- | -- | -- | 0.13 | 23 | -- | -- | -- | -- |
| 53.68 | 0.341 | 12.6 | 0.871 | -- | -0.566 | -- | -- | 0.317 | -- | 25.73 | 1528 | -- | -- |
| 63.1 | 0.37 | 12.6 | -- | 0.452 | -0.422 | -- | -- | 0.185 | 23.5 | 25.67 | 1091 | -- | -- |
| 63.41 | 0.372 | 12.6 | 0.679 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 68.28 | 0.387 | 12.7 | -- | 0.342 | -- | -- | -- | 0.0553 | 23.1 | -- | -- | -- | -- |
| 70.43 | 0.392 | 12.6 | -- | -- | -0.231 | -- | -- | 0.155 | -- | 25.5 | 1507 | -- | -- |
| 75.57 | 0.406 | 12.7 | -- | -- | -- | -- | -- | 0.0574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 3 | 45.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 9 | 45.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 13 | 45.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 56 | 45.54 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 76 | 45.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 77 | 45.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 116 | 45.62 | temperature | 20 | 14400 | < th | dose dependent | sin | 13 | NA |
| 182 | 45.68 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 209 | 45.70 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 255 | 45.73 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 266 | 45.74 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 268 | 45.74 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 325 | 45.78 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 343 | 45.79 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 346 | 45.79 | temperature | 20 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 363 | 45.80 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 19 |
| 389 | 45.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 424 | 45.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 19 |
| 499 | 45.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 500 | 45.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 14 |
| 532 | 45.86 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 18 |
| 535 | 45.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 562 | 45.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 647 | 45.89 | temperature | 20 | 14400 | < th | dose independent | sin | 8 | NA |
| 649 | 45.89 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 693 | 45.90 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 718 | 45.91 | temperature | 20 | 14400 | > th | dose independent | sin | 9 | NA |
| 722 | 45.91 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 735 | 45.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 780 | 45.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 823 | 45.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 8 |
| 908 | 45.95 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 931 | 45.95 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |