BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0178400 Os02g0178400|AK063815
         (69 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50460.1  | chr5:20552168-20552509 REVERSE LENGTH=70           102   3e-23
AT4G24920.1  | chr4:12820257-12820665 REVERSE LENGTH=70           102   3e-23
AT3G48570.1  | chr3:18004604-18004912 REVERSE LENGTH=70            97   1e-21

>AT5G50460.1 | chr5:20552168-20552509 REVERSE LENGTH=70
          Length = 69

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 55/68 (80%)

Query: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVG+
Sbjct: 61 INNIIVGA 68



>AT4G24920.1 | chr4:12820257-12820665 REVERSE LENGTH=70
          Length = 69

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 55/68 (80%)

Query: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVG+
Sbjct: 61 INNIIVGA 68



>AT3G48570.1 | chr3:18004604-18004912 REVERSE LENGTH=70
          Length = 69

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 53/68 (77%)

Query: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIXXXXXXXXXXXXKLIFIP 60
          M+A+DS +DPLR+FAK SVRLV+RCHKPDRKEFTKVA RTAI            KL+FIP
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,041,205
Number of extensions: 21883
Number of successful extensions: 61
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 69
Length of database: 11,106,569
Length adjustment: 41
Effective length of query: 28
Effective length of database: 9,982,513
Effective search space: 279510364
Effective search space used: 279510364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)