Os02g0176400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF872, eukaryotic family protein.
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Os02g0176400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF872, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.54 | 0.218 | 13.6 | -0.0188 | 0.624 | 0.462 | -0.0894 | -0.0974 | 0.136 | 23.4 | 21.2 | 530 | -- | -- |
| 21.56 | 0.216 | 13.6 | -0.000454 | 0.61 | 0.477 | -0.102 | -- | 0.139 | 23.3 | 21.23 | 592 | -- | -- |
| 21.57 | 0.216 | 13.6 | -0.0185 | 0.625 | 0.462 | -- | -0.109 | 0.136 | 23.4 | 21.21 | 529 | -- | -- |
| 21.6 | 0.216 | 13.6 | 0.00339 | 0.611 | 0.477 | -- | -- | 0.139 | 23.3 | 21.21 | 592 | -- | -- |
| 42.5 | 0.304 | 13.6 | 0.0291 | -- | 0.605 | -- | -0.0639 | 0.0911 | -- | 21.4 | 776 | -- | -- |
| 29.81 | 0.256 | 13.5 | 0.167 | 0.673 | -- | -0.147 | -- | 0.268 | 23 | -- | -- | -- | -- |
| 29.91 | 0.256 | 13.5 | 0.173 | 0.673 | -- | -- | -- | 0.268 | 23 | -- | -- | -- | -- |
| 42.15 | 0.302 | 13.6 | -0.0587 | -- | 0.668 | -- | -- | 0.09 | -- | 21.33 | 818 | -- | -- |
| 21.6 | 0.216 | 13.6 | -- | 0.609 | 0.479 | -- | -- | 0.138 | 23.3 | 21.22 | 600 | -- | -- |
| 58.11 | 0.356 | 13.5 | 0.188 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 30.69 | 0.259 | 13.5 | -- | 0.675 | -- | -- | -- | 0.249 | 23 | -- | -- | -- | -- |
| 42.23 | 0.303 | 13.6 | -- | -- | 0.653 | -- | -- | 0.1 | -- | 21.38 | 813 | -- | -- |
| 59.04 | 0.359 | 13.5 | -- | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.05 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 12 |
| 2 | 21.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 4 | 21.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 9 | 21.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 16 | 21.40 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 41 | 21.61 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 57 | 21.72 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 7 |
| 63 | 21.74 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 67 | 21.75 | temperature | 25 | 270 | < th | dose dependent | sin | 8 | NA |
| 69 | 21.77 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 87 | 21.87 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 88 | 21.88 | temperature | 15 | 30 | > th | dose dependent | sin | 7 | NA |
| 98 | 21.91 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 104 | 21.93 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 147 | 22.02 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 149 | 22.03 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 152 | 22.04 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 14 |
| 160 | 22.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 20 |
| 165 | 22.07 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 168 | 22.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 233 | 22.16 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 240 | 22.18 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 12 |
| 251 | 22.19 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 291 | 22.25 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 350 | 22.31 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 383 | 22.35 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 436 | 22.40 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 528 | 22.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 569 | 22.54 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 677 | 22.65 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 678 | 22.65 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 692 | 22.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 729 | 22.70 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 21 |
| 739 | 22.71 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 22 |
| 740 | 22.71 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 23 |
| 811 | 22.78 | wind | 7 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 836 | 22.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 841 | 22.80 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 9 |