BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0176400 Os02g0176400|AK062746
         (103 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29850.1  | chr4:14601818-14602874 REVERSE LENGTH=104          114   9e-27
AT2G19350.1  | chr2:8376329-8377097 FORWARD LENGTH=104            111   6e-26
AT3G29170.1  | chr3:11136240-11137542 REVERSE LENGTH=122           55   7e-09

>AT4G29850.1 | chr4:14601818-14602874 REVERSE LENGTH=104
          Length = 103

 Score =  114 bits (285), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 65/103 (63%)

Query: 1   MAYVDHAFSISDEDDLXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXVLMAANNVGGD 60
           MAYVDHAFSI+DED +             KE                    MA N VGGD
Sbjct: 1   MAYVDHAFSITDEDIMIETSYTVNNRPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGD 60

Query: 61  RAHGIFFMILGIVMFIPGFYYTRIAYYAYKGYKGFSFSNIPPI 103
           R HGIFF++LG ++FIPGFYYTRIAYYAYKGYKGFSFSNIPP+
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103



>AT2G19350.1 | chr2:8376329-8377097 FORWARD LENGTH=104
          Length = 103

 Score =  111 bits (278), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 64/103 (62%)

Query: 1   MAYVDHAFSISDEDDLXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXVLMAANNVGGD 60
           MAYVDHAFSISDED +             KE                    MA N VGGD
Sbjct: 1   MAYVDHAFSISDEDLMIGTSYTVSNRPPVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGD 60

Query: 61  RAHGIFFMILGIVMFIPGFYYTRIAYYAYKGYKGFSFSNIPPI 103
           R HGIFF++LG ++FIPGFYYTRIAYYAYKGYKGFSFSNIP +
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103



>AT3G29170.1 | chr3:11136240-11137542 REVERSE LENGTH=122
          Length = 121

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 59  GDRAHGIFFMILGIVMFIPGFYYTRIAYYAYKGYKGFSFSNIP 101
           GD + G   ++LGI+ F+PGFY TRIAYY+++G +G+ F+ IP
Sbjct: 77  GDSSQGYALLVLGILTFLPGFYETRIAYYSWRGAEGYRFAAIP 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.147    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,525,646
Number of extensions: 34504
Number of successful extensions: 103
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 3
Length of query: 103
Length of database: 11,106,569
Length adjustment: 73
Effective length of query: 30
Effective length of database: 9,105,201
Effective search space: 273156030
Effective search space used: 273156030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)