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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0175400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Vacuolar H(+)-ATPase subunit A (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.25 (0.042) R2 : 0.612
β1 : -4.13 (0.155) R2dD : 0.644 R2D : 0.518
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.782 (0.13) R2dE : 0.0326 R2E : -0.034
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.732 (0.091) R2dN8 : 0.0768 R2N8 : -0.0303
σ : 0.781
deviance : 281.55
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 73.22
memory length : 1384
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.88 0.77 5.25 -4.25 0.48 -0.789 -0.0835 0.716 -0.762 8.41 72.77 1364 -- --
268.34 0.763 5.24 -4.14 0.486 -0.786 -0.0364 -- -0.743 8.53 74 1343 -- --
267.75 0.762 5.26 -4.22 0.49 -0.789 -- 0.594 -0.771 8.41 73 1337 -- --
268.3 0.763 5.24 -4.14 0.492 -0.8 -- -- -0.74 8.72 74 1336 -- --
280.79 0.78 5.26 -4.22 -- -0.808 -- 0.573 -0.758 -- 73.38 1363 -- --
290.86 0.8 5.21 -3.99 0.489 -- -0.165 -- -0.629 7.93 -- -- -- --
290.94 0.799 5.21 -3.99 0.489 -- -- -- -0.628 7.95 -- -- -- --
281.55 0.781 5.25 -4.13 -- -0.782 -- -- -0.732 -- 73.22 1384 -- --
654.37 1.19 5.17 -- 0.645 -1.92 -- -- -0.448 7.33 87.91 1699 -- --
303.99 0.815 5.23 -3.99 -- -- -- -- -0.622 -- -- -- -- --
711.58 1.25 5.11 -- 0.469 -- -- -- -0.183 8.56 -- -- -- --
665.22 1.2 5.28 -- -- -1.79 -- -- -0.88 -- 87 7143 -- --
723.92 1.26 5.13 -- -- -- -- -- -0.179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.99 wind 7 43200 < th dose independent rect. 18 11
4 264.67 wind 7 43200 > th dose independent rect. 18 11
5 264.71 humidity 70 1440 > th dose independent rect. 15 18
9 265.18 humidity 70 1440 > th dose independent rect. 16 1
12 265.21 wind 7 43200 > th dose independent rect. 20 9
13 265.22 wind 5 43200 > th dose dependent rect. 21 5
15 265.34 wind 5 43200 > th dose dependent rect. 18 11
20 265.58 wind 7 43200 < th dose independent rect. 18 15
22 265.62 wind 7 43200 < th dose independent rect. 21 5
24 265.68 wind 7 43200 > th dose independent rect. 21 5
26 265.70 wind 5 43200 > th dose dependent rect. 20 9
31 265.77 humidity 80 1440 < th dose dependent rect. 19 2
33 265.86 humidity 80 1440 < th dose independent rect. 20 1
43 266.06 humidity 80 43200 < th dose independent rect. 19 1
45 266.09 wind 5 43200 > th dose dependent rect. 22 1
47 266.13 humidity 70 1440 > th dose independent rect. 15 13
49 266.16 humidity 70 1440 > th dose independent rect. 15 5
50 266.17 humidity 70 1440 > th dose independent rect. 15 7
51 266.17 humidity 70 1440 > th dose independent rect. 15 9
76 266.52 radiation 10 43200 > th dose independent rect. 15 1
77 266.52 wind 7 43200 > th dose independent rect. 18 15
79 266.52 wind 5 43200 > th dose dependent rect. 18 15
80 266.56 humidity 80 1440 < th dose independent rect. 19 3
89 266.71 humidity 70 1440 < th dose independent rect. 15 18
97 266.81 temperature 30 14400 > th dose dependent rect. 18 15
118 267.05 temperature 25 720 > th dose dependent rect. 20 1
131 267.23 humidity 70 1440 > th dose independent sin 13 NA
142 267.34 temperature 30 14400 > th dose independent rect. 18 15
151 267.48 temperature 30 1440 < th dose independent rect. 18 16
156 267.56 temperature 30 14400 > th dose dependent rect. 18 1
178 267.65 radiation 10 43200 > th dose independent rect. 14 4
193 267.68 humidity 80 1440 > th dose independent rect. 19 4
219 267.78 humidity 80 43200 > th dose independent rect. 19 1
221 267.79 temperature 30 14400 > th dose independent rect. 18 1
222 267.79 humidity 70 1440 < th dose independent rect. 16 1
236 267.80 humidity 80 1440 > th dose independent rect. 21 1
246 267.90 radiation 30 43200 > th dose independent rect. 15 1
270 268.07 temperature 30 14400 < th dose independent rect. 18 15
299 268.22 humidity 70 1440 < th dose independent rect. 15 5
318 268.32 humidity 70 1440 < th dose independent rect. 15 3
335 268.60 wind 5 43200 > th dose dependent sin 10 NA
336 268.62 radiation 40 43200 > th dose independent rect. 14 18
397 268.97 wind 7 43200 < th dose independent sin 11 NA
408 269.03 humidity 70 14400 < th dose independent rect. 19 13
415 269.07 radiation 30 4320 > th dose dependent rect. 15 17
421 269.12 humidity 70 14400 < th dose independent rect. 19 3
437 269.19 humidity 60 14400 > th dose independent rect. 18 1
443 269.21 radiation 10 43200 > th dose independent sin 16 NA
451 269.23 temperature 30 1440 > th dose independent rect. 18 16
468 269.30 atmosphere 995 43200 < th dose independent rect. 18 7
469 269.30 atmosphere 995 43200 < th dose dependent rect. 17 7
474 269.32 humidity 70 1440 < th dose independent sin 13 NA
497 269.33 humidity 70 4320 > th dose independent rect. 19 10
506 269.39 wind 9 43200 > th dose dependent rect. 17 1
517 269.45 atmosphere 995 43200 > th dose independent rect. 18 8
520 269.46 temperature 30 1440 > th dose independent rect. 18 18
524 269.49 wind 7 43200 > th dose independent sin 11 NA
528 269.51 atmosphere 995 43200 < th dose dependent rect. 15 13
538 269.55 radiation 30 4320 > th dose dependent rect. 15 2
606 269.70 temperature 30 14400 < th dose independent rect. 18 11
636 269.78 radiation 10 14400 < th dose independent rect. 17 1
641 269.80 temperature 30 14400 < th dose independent rect. 18 2
647 269.81 wind 9 43200 < th dose independent rect. 16 8
649 269.81 temperature 30 14400 < th dose independent rect. 18 13
652 269.82 temperature 30 14400 < th dose independent rect. 18 6
662 269.83 temperature 30 14400 < th dose independent rect. 18 4
665 269.83 atmosphere 995 43200 < th dose dependent rect. 16 10
674 269.86 radiation 10 43200 < th dose dependent rect. 9 1
701 269.94 radiation 20 4320 < th dose independent rect. 15 1
727 270.00 wind 7 43200 > th dose dependent rect. 1 1
750 270.11 radiation 10 14400 < th dose independent rect. 17 11
762 270.15 radiation 10 14400 < th dose independent rect. 17 7
766 270.15 temperature 30 1440 > th dose dependent rect. 18 15
770 270.17 radiation 10 14400 < th dose independent rect. 17 3
774 270.18 radiation 10 1440 > th dose independent rect. 15 2
781 270.19 wind 1 270 < th dose independent rect. 4 1
798 270.23 temperature 30 1440 < th dose independent rect. 5 5
801 270.25 temperature 30 1440 < th dose independent rect. 9 1
804 270.25 humidity 70 720 > th dose independent rect. 18 9
875 270.36 temperature 30 1440 < th dose independent rect. 1 11
876 270.36 temperature 30 1440 < th dose independent rect. 22 14
890 270.41 radiation 10 43200 < th dose dependent rect. 15 1
891 270.41 radiation 40 1440 < th dose dependent rect. 15 2
902 270.43 humidity 60 14400 < th dose dependent rect. 18 1
918 270.54 wind 5 43200 > th dose independent rect. 7 2
924 270.54 humidity 50 1440 > th dose dependent rect. 19 1
947 270.58 wind 5 43200 < th dose independent rect. 7 2
952 270.58 wind 1 43200 < th dose dependent rect. 22 1
953 270.58 radiation 10 14400 > th dose dependent rect. 17 1
998 270.62 wind 9 43200 < th dose independent rect. 17 1