Os02g0174300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os02g0174300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.99 | 0.399 | 10.1 | -0.262 | 1.23 | 2.33 | 0.681 | -3.13 | -0.203 | 21.5 | 9.507 | 268 | 7.93 | 19 |
| 79.63 | 0.416 | 10 | 0.0136 | 1.3 | 2.12 | -0.0973 | -- | -0.071 | 21.2 | 10.38 | 211 | 8.82 | 18.7 |
| 73.2 | 0.398 | 10.1 | -0.248 | 1.3 | 2.25 | -- | -2.62 | -0.195 | 21.3 | 10.1 | 258 | 7.93 | 19.1 |
| 79.46 | 0.415 | 10.1 | 0.000534 | 1.32 | 2.09 | -- | -- | -0.106 | 21.1 | 10.62 | 216 | 8.8 | 18.6 |
| 78.73 | 0.413 | 10 | -0.101 | -- | 3.16 | -- | -1.6 | -0.16 | -- | -2.803 | 471 | 7.27 | 17.8 |
| 128.31 | 0.531 | 10.1 | 0.311 | 2.39 | -- | -0.88 | -- | -0.00508 | 19.7 | -- | -- | -- | -- |
| 130.4 | 0.535 | 10.1 | 0.332 | 2.39 | -- | -- | -- | -0.00727 | 19.8 | -- | -- | -- | -- |
| 82.18 | 0.422 | 10 | 0.0235 | -- | 3.15 | -- | -- | -0.135 | -- | -5.139 | 450 | 7.32 | 18.1 |
| 79.43 | 0.415 | 10.1 | -- | 1.29 | 2.1 | -- | -- | -0.107 | 21.1 | 10.4 | 220 | 8.79 | 18.5 |
| 438.83 | 0.979 | 10 | 0.302 | -- | -- | -- | -- | -0.0411 | -- | -- | -- | -- | -- |
| 133.3 | 0.54 | 10.1 | -- | 2.39 | -- | -- | -- | -0.0442 | 19.8 | -- | -- | -- | -- |
| 82.04 | 0.422 | 10 | -- | -- | 3.11 | -- | -- | -0.128 | -- | -6.093 | 458 | 7.12 | 18.3 |
| 441.24 | 0.98 | 10 | -- | -- | -- | -- | -- | -0.0746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.30 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 73.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 22 | 78.96 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 24 | 79.26 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 32 | 79.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 91 | 83.72 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 136 | 86.09 | radiation | 10.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 143 | 86.24 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 147 | 86.44 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 11 |
| 149 | 86.46 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 9 |
| 171 | 87.09 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 173 | 87.11 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 181 | 87.19 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 209 | 87.87 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 247 | 88.64 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 252 | 88.74 | radiation | 1.0 | 90 | > th | dose independent | sin | 7 | NA |
| 254 | 88.75 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 5 |
| 268 | 89.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 272 | 89.36 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 286 | 89.58 | temperature | 10.0 | 10 | > th | dose dependent | sin | 17 | NA |
| 294 | 89.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 298 | 89.77 | temperature | 20.0 | 10 | > th | dose independent | rect. | 10 | 19 |
| 322 | 90.13 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 5 |
| 345 | 90.31 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 346 | 90.31 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 349 | 90.31 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 353 | 90.31 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 361 | 90.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 381 | 90.73 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 391 | 90.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 5 |
| 392 | 90.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 5 |
| 395 | 90.91 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 11 |
| 407 | 90.95 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 450 | 91.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 460 | 91.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 462 | 91.42 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 503 | 92.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 526 | 92.36 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 527 | 92.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 533 | 92.43 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 537 | 92.45 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 576 | 92.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 579 | 92.87 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 8 |
| 587 | 92.95 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 630 | 93.41 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 632 | 93.41 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 634 | 93.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 635 | 93.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 638 | 93.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 639 | 93.42 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 667 | 93.58 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 708 | 93.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 19 |
| 716 | 93.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 763 | 94.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 901 | 94.71 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 15 |
| 913 | 94.80 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 15 |
| 922 | 94.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 923 | 94.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 926 | 94.85 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 18 |
| 927 | 94.85 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 937 | 94.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 943 | 94.96 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 947 | 94.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 17 |
| 951 | 94.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 967 | 95.06 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 987 | 95.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |