BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0174300 Os02g0174300|Os02g0174300
         (437 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31270.1  | chr4:15183291-15184503 REVERSE LENGTH=295           61   1e-09

>AT4G31270.1 | chr4:15183291-15184503 REVERSE LENGTH=295
          Length = 294

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 62  RRTRSGGAPEWTPXXXXXXXXXXXXXDDGWSRSVSAFQKWAIVAENLXXXXXXXXXXXXX 121
           RRTRS  APEW               +   S ++S+FQKW ++ EN              
Sbjct: 9   RRTRSQVAPEWAVKDCLVLVNEIAAVEADCSNALSSFQKWTMITENCNALDVSRNLNQCR 68

Query: 122 XXXXXXXXXXWEALAAEYGVVRRWE--VRGAG-GYWRMSAAARRKAGLPADFDAEVY 175
                     W++L ++Y  +++WE   RG G  YW +S+  R+   LP D D E++
Sbjct: 69  RK--------WDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPGDIDIELF 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,363,647
Number of extensions: 204638
Number of successful extensions: 554
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,310,137
Effective search space: 2783895895
Effective search space used: 2783895895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)