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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0173600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dreg-2 like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0465) R2 : 0.00654
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.169 (0.0978) R2dN8 : 0.00845 R2N8 : 0.00654
σ : 0.875
deviance : 351.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
333.89 0.859 2.96 0.0742 0.0474 -0.441 0.28 -0.462 0.0142 5.26 1005 106 -- --
335.08 0.853 2.97 0.081 0.038 -0.449 0.268 -- 0.0297 5.07 1005 105 -- --
334.08 0.851 2.97 0.0747 0.0482 -0.437 -- -0.46 0.0107 5.6 1005 105 -- --
335.26 0.853 2.97 0.0805 0.0399 -0.445 -- -- 0.0269 5.68 1005 105 -- --
334.2 0.851 2.97 0.0766 -- -0.43 -- -0.45 0.0104 -- 1005 105 -- --
350.91 0.878 3.01 0.0934 0.0699 -- -0.036 -- -0.158 18 -- -- -- --
350.91 0.877 3.01 0.0937 0.0698 -- -- -- -0.158 18.2 -- -- -- --
335.31 0.853 2.97 0.0834 -- -0.44 -- -- 0.0257 -- 1005 117 -- --
335.41 0.853 2.97 -- 0.0397 -0.445 -- -- 0.0169 5.68 1005 117 -- --
351.16 0.876 3.01 0.0917 -- -- -- -- -0.159 -- -- -- -- --
351.14 0.877 3.01 -- 0.0684 -- -- -- -0.168 18.2 -- -- -- --
335.49 0.853 2.97 -- -- -0.44 -- -- 0.0165 -- 1005 117 -- --
351.39 0.875 3.01 -- -- -- -- -- -0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.81 precipitation 0.1 90 > th dose independent rect. 21 1
3 321.81 precipitation 0.1 90 > th dose dependent rect. 21 1
9 324.82 radiation 20.0 90 > th dose independent rect. 6 1
23 324.82 radiation 20.0 90 > th dose dependent rect. 6 1
37 326.45 wind 7.0 30 > th dose independent rect. 20 9
45 326.52 wind 7.0 30 > th dose dependent rect. 21 8
67 326.58 wind 7.0 90 > th dose independent rect. 20 1
78 326.60 wind 7.0 90 > th dose dependent rect. 20 1
91 326.90 precipitation 0.1 10 > th dose independent rect. 21 1
102 326.90 precipitation 0.1 10 > th dose dependent rect. 21 1
113 327.51 wind 7.0 30 > th dose dependent rect. 18 11
121 327.59 wind 7.0 30 > th dose dependent rect. 18 4
150 329.86 precipitation 0.1 90 > th dose independent rect. 18 4
172 330.48 wind 5.0 10 < th dose dependent rect. 16 1
191 330.86 wind 7.0 30 > th dose independent rect. 18 11
194 330.86 atmosphere 1005.0 90 > th dose independent rect. 8 21
196 330.88 wind 7.0 30 > th dose independent rect. 18 8
198 330.89 wind 7.0 30 > th dose independent rect. 18 4
207 331.32 atmosphere 1005.0 30 < th dose independent rect. 12 23
209 331.36 atmosphere 1005.0 90 < th dose independent rect. 20 21
211 331.42 wind 5.0 90 > th dose independent rect. 6 1
214 331.42 wind 5.0 90 > th dose dependent rect. 6 1
233 331.81 wind 3.0 90 > th dose independent rect. 20 1
234 331.87 wind 1.0 90 > th dose dependent rect. 20 1
235 331.96 atmosphere 1005.0 90 > th dose independent rect. 22 22
239 332.05 atmosphere 1015.0 30 < th dose dependent rect. 20 14
243 332.25 atmosphere 1015.0 720 < th dose dependent rect. 20 5
245 332.34 wind 5.0 90 > th dose dependent rect. 4 3
248 332.37 wind 5.0 90 > th dose independent rect. 4 3
255 332.48 atmosphere 1015.0 720 < th dose dependent rect. 20 3
266 332.73 atmosphere 995.0 270 > th dose dependent rect. 22 13
276 332.86 atmosphere 1005.0 90 > th dose independent rect. 22 15
291 333.00 atmosphere 1015.0 720 < th dose dependent rect. 20 10
297 333.09 humidity 50.0 30 < th dose dependent rect. 15 3
341 333.25 wind 5.0 90 > th dose dependent rect. 2 6
346 333.28 atmosphere 995.0 30 > th dose dependent rect. 22 15
358 333.44 precipitation 0.1 90 > th dose independent rect. 13 9
373 333.51 atmosphere 1015.0 720 < th dose dependent rect. 20 1
377 333.56 wind 1.0 90 < th dose dependent rect. 14 1
379 333.58 atmosphere 995.0 720 > th dose dependent rect. 22 5
384 333.63 humidity 50.0 30 < th dose dependent sin 12 NA
390 333.68 atmosphere 1015.0 30 < th dose dependent rect. 13 21
392 333.70 radiation 10.0 30 > th dose independent rect. 13 19
406 333.82 wind 7.0 30 > th dose dependent sin 11 NA
409 333.85 atmosphere 1005.0 720 > th dose independent rect. 21 5
430 334.11 atmosphere 1015.0 720 < th dose dependent rect. 5 1
431 334.12 humidity 90.0 10 > th dose dependent rect. 22 1
440 334.18 atmosphere 1005.0 90 > th dose independent rect. 15 22
445 334.22 humidity 90.0 10 > th dose independent rect. 22 1
455 334.32 precipitation 0.1 90 < th dose independent sin 15 NA
456 334.32 atmosphere 1005.0 30 < th dose independent rect. 24 23
457 334.32 precipitation 0.1 90 < th dose dependent sin 15 NA
458 334.35 precipitation 0.1 90 > th dose independent sin 15 NA
466 334.39 atmosphere 995.0 720 > th dose dependent rect. 23 3
469 334.41 atmosphere 1005.0 30 < th dose independent rect. 8 23
475 334.44 radiation 10.0 30 > th dose independent sin 13 NA
477 334.45 wind 1.0 90 > th dose independent rect. 20 13
479 334.45 atmosphere 1005.0 30 < th dose independent rect. 13 18
498 334.57 atmosphere 1010.0 90 < th dose dependent rect. 20 21
499 334.57 atmosphere 995.0 30 > th dose dependent rect. 22 22
501 334.58 wind 1.0 90 > th dose independent rect. 4 13
504 334.59 atmosphere 1005.0 30 > th dose independent rect. 19 23
511 334.61 atmosphere 1005.0 30 < th dose independent rect. 24 17
522 334.69 humidity 50.0 30 < th dose independent rect. 15 3
564 334.78 wind 3.0 10 < th dose independent rect. 16 1
609 334.86 radiation 10.0 30 < th dose independent sin 13 NA
672 335.11 radiation 1.0 30 < th dose independent rect. 22 22
681 335.14 atmosphere 1005.0 90 > th dose independent no NA NA
684 335.15 wind 5.0 90 > th dose independent rect. 2 6
711 335.27 humidity 50.0 30 < th dose independent sin 12 NA
712 335.27 atmosphere 1005.0 30 < th dose independent no NA NA
713 335.27 atmosphere 1005.0 30 < th dose independent rect. 3 23
716 335.28 radiation 10.0 720 < th dose independent rect. 17 1
718 335.28 atmosphere 1005.0 30 < th dose independent rect. 5 23
721 335.29 atmosphere 995.0 720 > th dose dependent rect. 17 11
726 335.33 humidity 50.0 30 > th dose independent sin 12 NA
729 335.34 atmosphere 1005.0 720 > th dose independent rect. 24 1
730 335.34 atmosphere 1005.0 30 < th dose independent rect. 15 23
776 335.56 precipitation 0.1 90 > th dose independent rect. 15 7
784 335.61 atmosphere 1010.0 720 < th dose dependent rect. 23 1
790 335.64 precipitation 0.1 90 > th dose independent rect. 6 16
866 335.89 atmosphere 1000.0 10 > th dose dependent rect. 8 22
867 335.90 atmosphere 1005.0 720 < th dose independent rect. 21 1
874 335.90 atmosphere 1000.0 90 > th dose dependent rect. 8 21
875 335.91 atmosphere 1005.0 90 < th dose independent rect. 20 14
883 335.92 atmosphere 1010.0 720 < th dose dependent sin 12 NA
892 335.94 humidity 70.0 10 < th dose independent rect. 16 1
902 335.96 radiation 1.0 30 < th dose dependent rect. 22 22
919 336.01 atmosphere 1005.0 90 > th dose independent rect. 1 23
922 336.02 precipitation 0.1 30 > th dose dependent rect. 7 16
969 336.08 humidity 80.0 90 < th dose dependent rect. 6 2
970 336.08 humidity 80.0 90 < th dose dependent rect. 15 2
978 336.11 atmosphere 1005.0 10 < th dose independent rect. 16 1