BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0173600 Os02g0173600|AK121841
         (96 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44730.2  | chr5:18045588-18046519 REVERSE LENGTH=256          147   1e-36

>AT5G44730.2 | chr5:18045588-18046519 REVERSE LENGTH=256
          Length = 255

 Score =  147 bits (370), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 76/88 (86%)

Query: 1  MSLLSKLRLVTVDVTGTLIAYKGQLGDYYCMAAKSAGMPCPDYKRMHEGFKAAYTEMTVR 60
          +SLLSKLR +TVDVTGTLIAYKG+LGDYYCMAAK+ G+PCPDYKR+HEGFK AYT+M  +
Sbjct: 3  VSLLSKLRCITVDVTGTLIAYKGELGDYYCMAAKAIGLPCPDYKRVHEGFKLAYTDMAQK 62

Query: 61 HPCFGHASNMPNIDWWKMCVKDSFIRVN 88
          +PCFG  + MPNI WWK CV+DSF++  
Sbjct: 63 YPCFGFHAKMPNIVWWKTCVRDSFVKAG 90



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,117,235
Number of extensions: 74269
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 11,106,569
Length adjustment: 66
Effective length of query: 30
Effective length of database: 9,297,113
Effective search space: 278913390
Effective search space used: 278913390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)