Os02g0173000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Urease accessory protein UreD family protein.
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Os02g0173000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Urease accessory protein UreD family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.05 | 0.482 | 7.63 | -1.19 | 1.33 | -1.76 | -0.204 | 1.11 | -0.115 | 0.454 | 23.65 | 1288 | -- | -- |
| 106.23 | 0.48 | 7.6 | -1.02 | 1.3 | -1.94 | -0.181 | -- | -0.0787 | 0.422 | 23.29 | 1275 | -- | -- |
| 105.19 | 0.478 | 7.62 | -1.18 | 1.32 | -1.75 | -- | 1.16 | -0.113 | 0.473 | 23.63 | 1255 | -- | -- |
| 106.44 | 0.481 | 7.6 | -1.01 | 1.32 | -1.95 | -- | -- | -0.0666 | 0.432 | 23.23 | 1277 | -- | -- |
| 184.61 | 0.633 | 7.66 | -1.49 | -- | -2.3 | -- | 1.93 | -0.311 | -- | 29.5 | 957 | -- | -- |
| 150.77 | 0.576 | 7.53 | -0.476 | 1.42 | -- | -0.319 | -- | 0.261 | 0.557 | -- | -- | -- | -- |
| 151.21 | 0.576 | 7.52 | -0.464 | 1.42 | -- | -- | -- | 0.263 | 0.564 | -- | -- | -- | -- |
| 188.98 | 0.64 | 7.61 | -1.1 | -- | -2.34 | -- | -- | -0.218 | -- | 28.8 | 953 | -- | -- |
| 129.41 | 0.53 | 7.56 | -- | 1.31 | -1.37 | -- | -- | 0.111 | 0.488 | 23.6 | 1182 | -- | -- |
| 277.54 | 0.778 | 7.5 | -0.414 | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
| 156.88 | 0.586 | 7.51 | -- | 1.41 | -- | -- | -- | 0.315 | 0.548 | -- | -- | -- | -- |
| 216.94 | 0.686 | 7.56 | -- | -- | -1.88 | -- | -- | -0.00449 | -- | 29.15 | 943 | -- | -- |
| 282.07 | 0.784 | 7.49 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 98.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 98.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 5 | 98.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 6 | 98.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 7 | 98.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 22 | 98.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 29 | 98.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 37 | 99.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 49 | 99.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 63 | 99.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 73 | 99.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 12 |
| 83 | 99.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 85 | 99.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 88 | 99.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 125 | 99.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 177 | 100.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 182 | 100.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 278 | 100.60 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 323 | 100.84 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 327 | 100.86 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 333 | 100.90 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 351 | 101.01 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 372 | 101.09 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 374 | 101.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 439 | 101.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 462 | 101.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 485 | 101.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 490 | 101.50 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 546 | 101.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 554 | 101.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 560 | 101.74 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 646 | 102.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 701 | 102.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 754 | 102.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 762 | 102.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 790 | 102.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 800 | 102.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 958 | 102.91 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |