BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0173000 Os02g0173000|AK119397
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35035.1  | chr2:14763387-14765045 REVERSE LENGTH=295          145   4e-36

>AT2G35035.1 | chr2:14763387-14765045 REVERSE LENGTH=295
          Length = 294

 Score =  145 bits (367), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 80/94 (85%), Gaps = 1/94 (1%)

Query: 1   VYKAVDSKCSEQVLEARVGEDALFALIPDPVTCFSMARYHQKQVFHVFPNSNLVVVDWFT 60
           VYKA+ SKCSEQ+LEAR+G +AL  +IPDPVTCFS ARY+QKQ+F +  +SNLV+VDW T
Sbjct: 81  VYKAIGSKCSEQILEARIGSEALLVVIPDPVTCFSTARYYQKQIFRLLSDSNLVLVDWIT 140

Query: 61  SGRYESGEKWNFSFYKSINHILLEDQ-PLFIDSV 93
           SGR+ +GEKW+F FYKSIN++ LED  PLF+D+V
Sbjct: 141 SGRHANGEKWDFEFYKSINNVYLEDDHPLFLDTV 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,043,418
Number of extensions: 121514
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)