Os02g0171100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH).
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Os02g0171100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.01 | 0.278 | 11.2 | 0.0225 | 0.718 | -0.516 | 0.152 | 0.0198 | -0.0237 | 12.5 | 73.94 | 1295 | -- | -- |
| 35 | 0.276 | 11.2 | 0.0254 | 0.727 | -0.52 | 0.157 | -- | -0.025 | 12.5 | 73.87 | 1280 | -- | -- |
| 35.09 | 0.276 | 11.2 | 0.0209 | 0.73 | -0.518 | -- | 0.0642 | -0.0226 | 12.5 | 73.8 | 1275 | -- | -- |
| 35.1 | 0.276 | 11.2 | 0.03 | 0.728 | -0.516 | -- | -- | -0.0216 | 12.5 | 74 | 1278 | -- | -- |
| 52.47 | 0.339 | 11.2 | 0.0699 | -- | -0.41 | -- | 0.0437 | 0.0342 | -- | 73.8 | 1275 | -- | -- |
| 44.12 | 0.311 | 11.2 | 0.122 | 0.635 | -- | 0.0812 | -- | 0.0481 | 12.3 | -- | -- | -- | -- |
| 44.15 | 0.311 | 11.2 | 0.125 | 0.635 | -- | -- | -- | 0.0485 | 12.4 | -- | -- | -- | -- |
| 52.48 | 0.339 | 11.2 | 0.0712 | -- | -0.41 | -- | -- | 0.0347 | -- | 73.97 | 1588 | -- | -- |
| 35.12 | 0.276 | 11.2 | -- | 0.728 | -0.52 | -- | -- | -0.0251 | 12.5 | 74 | 1278 | -- | -- |
| 69.51 | 0.39 | 11.2 | 0.104 | -- | -- | -- | -- | 0.0384 | -- | -- | -- | -- | -- |
| 44.57 | 0.312 | 11.2 | -- | 0.633 | -- | -- | -- | 0.0346 | 12.3 | -- | -- | -- | -- |
| 52.15 | 0.337 | 11.2 | -- | -- | -0.407 | -- | -- | 0.0188 | -- | 75 | 1607 | -- | -- |
| 69.8 | 0.39 | 11.2 | -- | -- | -- | -- | -- | 0.0268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.06 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 2 | 35.13 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 3 | 35.16 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 16 | 35.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 25 | 35.40 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 28 | 35.41 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 54 | 35.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 58 | 35.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 64 | 35.52 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 68 | 35.52 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 73 | 35.54 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 74 | 35.55 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 132 | 35.69 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 136 | 35.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 166 | 35.73 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 176 | 35.76 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 289 | 35.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 352 | 36.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 461 | 36.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 492 | 36.14 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 495 | 36.14 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 507 | 36.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 534 | 36.17 | humidity | 60 | 14400 | < th | dose independent | sin | 12 | NA |
| 584 | 36.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 586 | 36.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 598 | 36.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 678 | 36.29 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 679 | 36.29 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 786 | 36.33 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 806 | 36.35 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 807 | 36.35 | humidity | 70 | 14400 | < th | dose dependent | sin | 12 | NA |
| 850 | 36.38 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 870 | 36.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 907 | 36.42 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 920 | 36.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 953 | 36.45 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |