Os02g0168400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0168400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.16 | 0.58 | 6.36 | 3.02 | 0.978 | 1.39 | -0.373 | -1.91 | 0.249 | 0.215 | 24.5 | 12 | -- | -- |
| 153.64 | 0.577 | 6.33 | 3.27 | 0.956 | 1.23 | -0.118 | -- | 0.309 | 0.164 | 24.29 | 12 | -- | -- |
| 152.66 | 0.575 | 6.35 | 3.08 | 0.979 | 1.38 | -- | -1.54 | 0.26 | 0.206 | 24.5 | 12 | -- | -- |
| 153.7 | 0.577 | 6.33 | 3.27 | 0.958 | 1.24 | -- | -- | 0.31 | 0.176 | 24.29 | 12 | -- | -- |
| 179.9 | 0.625 | 6.32 | 3.06 | -- | 1.17 | -- | 0.489 | 0.246 | -- | 11.99 | 714 | -- | -- |
| 177.11 | 0.624 | 6.3 | 3.46 | 0.666 | -- | -0.261 | -- | 0.451 | 22.3 | -- | -- | -- | -- |
| 177.38 | 0.624 | 6.3 | 3.47 | 0.668 | -- | -- | -- | 0.452 | 22.2 | -- | -- | -- | -- |
| 178.84 | 0.623 | 6.33 | 3.16 | -- | 1.28 | -- | -- | 0.259 | -- | 11.6 | 733 | -- | -- |
| 403.63 | 0.936 | 6.46 | -- | 1.24 | 2.9 | -- | -- | -0.276 | 1.1 | 14.2 | 95 | -- | -- |
| 204.49 | 0.668 | 6.28 | 3.48 | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
| 495.44 | 1.04 | 6.39 | -- | 0.688 | -- | -- | -- | 0.0649 | 22.6 | -- | -- | -- | -- |
| 240.73 | 0.723 | 6.55 | -- | -- | 2.71 | -- | -- | -0.744 | -- | 7.327 | 47520 | -- | -- |
| 524.6 | 1.07 | 6.37 | -- | -- | -- | -- | -- | 0.0668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 2 | 151.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 16 |
| 5 | 152.07 | wind | 7 | 10 | < th | dose independent | rect. | 3 | 23 |
| 8 | 152.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 9 | 152.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 11 | 152.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 12 | 152.47 | wind | 7 | 30 | < th | dose dependent | sin | 22 | NA |
| 13 | 152.49 | wind | 9 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 19 | 152.71 | wind | 5 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 24 | 152.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 25 | 152.89 | wind | 5 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 28 | 152.91 | wind | 3 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 46 | 153.10 | wind | 5 | 10 | > th | dose independent | rect. | 9 | 10 |
| 56 | 153.20 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 67 | 153.24 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 20 |
| 81 | 153.33 | temperature | 25 | 90 | > th | dose independent | sin | 23 | NA |
| 90 | 153.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 96 | 153.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 106 | 153.45 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 117 | 153.50 | wind | 3 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 159 | 153.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 165 | 153.78 | temperature | 25 | 90 | < th | dose independent | sin | 23 | NA |
| 166 | 153.78 | wind | 5 | 90 | > th | dose independent | rect. | 8 | 11 |
| 168 | 153.79 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 10 |
| 183 | 153.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 185 | 153.85 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 187 | 153.86 | wind | 5 | 90 | > th | dose dependent | sin | 22 | NA |
| 188 | 153.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 190 | 153.87 | wind | 5 | 90 | > th | dose dependent | rect. | 22 | 21 |
| 232 | 154.09 | wind | 5 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 235 | 154.10 | wind | 5 | 90 | > th | dose dependent | rect. | 8 | 17 |
| 259 | 154.16 | wind | 5 | 10 | > th | dose independent | rect. | 5 | 14 |
| 278 | 154.20 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 294 | 154.26 | wind | 5 | 90 | > th | dose independent | rect. | 5 | 14 |
| 306 | 154.28 | wind | 5 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 365 | 154.46 | wind | 3 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 366 | 154.46 | wind | 3 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 382 | 154.50 | wind | 5 | 10 | < th | dose independent | sin | 23 | NA |
| 429 | 154.64 | wind | 3 | 10 | > th | dose dependent | sin | 22 | NA |
| 554 | 154.96 | wind | 5 | 10 | > th | dose independent | sin | 22 | NA |
| 561 | 154.98 | wind | 7 | 90 | > th | dose independent | rect. | 22 | 20 |
| 575 | 155.00 | wind | 5 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 625 | 155.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 652 | 155.13 | wind | 5 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 666 | 155.18 | wind | 5 | 90 | < th | dose independent | sin | 23 | NA |
| 667 | 155.18 | wind | 7 | 90 | > th | dose independent | rect. | 1 | 17 |
| 676 | 155.19 | wind | 3 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 680 | 155.20 | wind | 3 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 708 | 155.27 | wind | 5 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 725 | 155.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 794 | 155.43 | wind | 3 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 797 | 155.43 | wind | 5 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 814 | 155.48 | wind | 5 | 90 | > th | dose dependent | no | NA | NA |
| 819 | 155.49 | wind | 7 | 90 | > th | dose independent | sin | 22 | NA |
| 880 | 155.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 3 |
| 903 | 155.61 | wind | 5 | 270 | < th | dose independent | rect. | 3 | 13 |
| 956 | 155.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 962 | 155.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 981 | 155.77 | wind | 7 | 90 | > th | dose independent | rect. | 13 | 23 |
| 985 | 155.78 | temperature | 25 | 10 | > th | dose independent | sin | 22 | NA |