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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0167700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0158) R2 : 0.32
β1 : 0.822 (0.0578) R2dD : 0.313 R2D : 0.245
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.206 (0.0337) R2dN8 : 0.0747 R2N8 : 0.00661
σ : 0.296
deviance : 40.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.18 0.226 11.5 0.9 0.462 0.469 0.114 -0.318 0.241 18.7 48.06 1284 -- --
23.33 0.225 11.5 0.87 0.464 0.462 0.0963 -- 0.235 18.8 50 1273 -- --
23.21 0.224 11.5 0.897 0.463 0.469 -- -0.32 0.241 18.7 48.98 1277 -- --
23.36 0.225 11.5 0.861 0.464 0.447 -- -- 0.234 18.7 49 1277 -- --
34.25 0.273 11.5 0.896 -- 0.495 -- -0.3 0.242 -- 49 1323 -- --
27.79 0.247 11.5 0.836 0.487 -- 0.0708 -- 0.216 18.2 -- -- -- --
27.8 0.247 11.5 0.836 0.488 -- -- -- 0.217 18.2 -- -- -- --
34.41 0.273 11.5 0.862 -- 0.483 -- -- 0.23 -- 49.02 1326 -- --
40.6 0.297 11.5 -- 0.471 0.606 -- -- 0.218 18.2 82 1446 -- --
40.14 0.296 11.5 0.822 -- -- -- -- 0.206 -- -- -- -- --
46.21 0.318 11.5 -- 0.476 -- -- -- 0.124 18.3 -- -- -- --
51.32 0.334 11.5 -- -- 0.664 -- -- 0.207 -- 81.37 1369 -- --
57.97 0.355 11.5 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.70 radiation 1.0 270 < th dose dependent rect. 5 21
2 20.84 radiation 1.0 270 < th dose independent rect. 5 21
7 21.52 radiation 1.0 270 < th dose dependent rect. 10 16
9 21.53 radiation 1.0 270 < th dose dependent rect. 12 14
15 21.60 radiation 1.0 270 < th dose independent rect. 12 14
18 21.60 humidity 50.0 90 > th dose dependent rect. 19 8
34 21.73 humidity 50.0 270 > th dose independent rect. 5 21
43 21.77 precipitation 0.1 270 < th dose independent rect. 3 2
44 21.77 wind 5.0 270 < th dose independent rect. 1 5
46 21.77 precipitation 0.1 270 < th dose dependent rect. 3 2
47 21.77 temperature 10.0 270 > th dose dependent rect. 14 16
48 21.78 wind 5.0 270 < th dose independent rect. 3 2
50 21.78 precipitation 0.1 90 < th dose independent rect. 3 16
51 21.78 precipitation 0.1 90 < th dose dependent rect. 3 16
54 21.79 humidity 50.0 270 > th dose independent rect. 6 19
55 21.79 wind 7.0 90 < th dose dependent rect. 3 5
61 21.82 wind 7.0 270 < th dose dependent rect. 3 2
70 21.87 temperature 10.0 10 > th dose dependent rect. 3 5
79 21.94 wind 5.0 90 < th dose independent rect. 3 5
83 21.95 wind 9.0 270 < th dose independent rect. 5 22
96 21.99 precipitation 0.1 270 < th dose independent rect. 1 6
97 21.99 humidity 70.0 90 > th dose independent rect. 19 8
98 21.99 precipitation 0.1 270 < th dose dependent rect. 1 6
99 22.00 temperature 10.0 270 > th dose dependent rect. 3 2
101 22.01 temperature 10.0 270 > th dose dependent rect. 1 5
104 22.02 precipitation 0.1 10 < th dose independent rect. 3 5
105 22.02 precipitation 0.1 90 < th dose independent rect. 3 5
106 22.02 wind 9.0 90 < th dose independent rect. 19 8
107 22.02 temperature 10.0 90 > th dose independent rect. 19 8
108 22.02 temperature 30.0 90 < th dose independent rect. 19 8
109 22.02 humidity 50.0 90 > th dose independent rect. 19 8
111 22.02 atmosphere 995.0 90 > th dose independent rect. 19 8
112 22.02 radiation 1.0 90 < th dose independent rect. 19 8
118 22.02 temperature 10.0 90 > th dose independent rect. 3 16
119 22.02 atmosphere 1015.0 90 < th dose independent rect. 3 16
120 22.02 precipitation 0.1 10 < th dose dependent rect. 3 5
121 22.02 precipitation 0.1 90 < th dose dependent rect. 3 5
122 22.02 radiation 1.0 90 < th dose dependent rect. 19 8
133 22.04 wind 7.0 10 < th dose dependent rect. 3 5
136 22.05 precipitation 0.1 270 < th dose independent rect. 14 16
140 22.05 humidity 50.0 270 > th dose dependent rect. 17 8
141 22.05 precipitation 0.1 270 < th dose dependent rect. 14 16
145 22.07 wind 9.0 90 < th dose independent rect. 8 19
151 22.09 temperature 10.0 10 > th dose dependent rect. 15 17
153 22.10 precipitation 0.1 90 < th dose independent rect. 19 8
155 22.10 precipitation 0.1 90 < th dose dependent rect. 19 8
173 22.14 humidity 60.0 270 > th dose independent rect. 17 9
191 22.18 temperature 10.0 270 > th dose independent rect. 3 2
193 22.18 temperature 30.0 270 < th dose independent rect. 3 2
194 22.18 humidity 50.0 270 > th dose independent rect. 3 2
197 22.18 atmosphere 995.0 270 > th dose independent rect. 3 2
198 22.18 atmosphere 1010.0 270 < th dose independent rect. 3 2
200 22.18 radiation 20.0 270 < th dose independent rect. 3 2
204 22.18 temperature 10.0 270 > th dose independent rect. 5 22
205 22.18 radiation 30.0 270 < th dose dependent rect. 3 2
208 22.19 radiation 1.0 270 < th dose independent rect. 3 2
211 22.19 radiation 10.0 270 < th dose dependent rect. 3 2
234 22.24 temperature 10.0 90 > th dose independent rect. 3 5
236 22.24 temperature 30.0 90 < th dose independent rect. 3 5
237 22.24 humidity 50.0 90 > th dose independent rect. 3 5
239 22.24 atmosphere 995.0 90 > th dose independent rect. 3 5
240 22.24 atmosphere 1015.0 90 < th dose independent rect. 3 5
241 22.24 wind 7.0 270 < th dose independent rect. 6 8
243 22.24 precipitation 0.1 270 < th dose independent rect. 1 18
244 22.24 temperature 10.0 90 > th dose independent rect. 8 19
246 22.24 precipitation 0.1 270 < th dose dependent rect. 1 18
247 22.25 wind 1.0 270 > th dose independent rect. 3 1
248 22.25 wind 5.0 10 < th dose independent rect. 3 5
273 22.26 radiation 40.0 90 < th dose independent rect. 3 5
281 22.27 temperature 10.0 270 > th dose independent rect. 1 6
283 22.27 temperature 30.0 270 < th dose independent rect. 1 6
284 22.27 humidity 50.0 270 > th dose independent rect. 1 6
286 22.27 atmosphere 995.0 270 > th dose independent rect. 1 6
287 22.27 atmosphere 1015.0 270 < th dose independent rect. 1 6
288 22.27 radiation 30.0 270 < th dose independent rect. 1 6
294 22.27 radiation 40.0 270 < th dose dependent rect. 1 6
335 22.32 wind 9.0 90 < th dose independent rect. 3 16
345 22.34 wind 9.0 10 < th dose independent rect. 8 19
352 22.35 atmosphere 995.0 90 > th dose independent rect. 3 16
394 22.40 temperature 10.0 270 > th dose independent rect. 6 8
395 22.40 atmosphere 995.0 270 > th dose independent rect. 6 8
396 22.40 atmosphere 1015.0 270 < th dose independent rect. 6 8
397 22.40 precipitation 0.1 270 < th dose independent rect. 6 8
401 22.40 temperature 10.0 270 > th dose independent rect. 14 15
403 22.40 precipitation 0.1 270 < th dose dependent rect. 6 8
404 22.40 temperature 10.0 270 > th dose dependent rect. 11 20
441 22.44 humidity 50.0 270 > th dose dependent rect. 3 2
446 22.45 temperature 10.0 10 > th dose independent rect. 3 5
448 22.45 temperature 30.0 10 < th dose independent rect. 3 5
449 22.45 humidity 50.0 10 > th dose independent rect. 3 5
451 22.45 atmosphere 995.0 10 > th dose independent rect. 3 5
452 22.45 atmosphere 1015.0 10 < th dose independent rect. 3 5
456 22.45 temperature 10.0 10 > th dose independent rect. 8 19
457 22.45 temperature 30.0 90 < th dose independent rect. 8 19
463 22.46 atmosphere 1005.0 270 > th dose independent rect. 3 2
482 22.49 precipitation 0.1 90 < th dose independent rect. 8 19
486 22.49 precipitation 0.1 90 < th dose dependent rect. 8 19
489 22.50 atmosphere 1005.0 90 > th dose independent rect. 3 5
512 22.51 wind 7.0 270 < th dose independent rect. 19 6
520 22.52 atmosphere 1005.0 270 > th dose independent rect. 1 5
528 22.52 humidity 50.0 90 > th dose dependent rect. 8 19
530 22.53 wind 9.0 270 < th dose independent rect. 14 16
558 22.54 precipitation 0.1 270 < th dose independent rect. 6 19
562 22.54 precipitation 0.1 270 < th dose dependent rect. 6 19
563 22.55 radiation 40.0 10 < th dose independent rect. 3 5
568 22.55 atmosphere 995.0 270 > th dose independent rect. 19 6
577 22.55 precipitation 0.1 10 < th dose independent rect. 8 19
585 22.55 precipitation 0.1 10 < th dose dependent rect. 8 19
624 22.58 atmosphere 995.0 270 > th dose independent rect. 14 16
625 22.58 radiation 40.0 270 < th dose independent rect. 14 16
671 22.63 atmosphere 1005.0 10 > th dose independent rect. 3 5
680 22.63 temperature 10.0 270 > th dose dependent rect. 11 9
689 22.64 atmosphere 995.0 90 > th dose independent rect. 8 19
701 22.65 precipitation 0.1 270 < th dose independent rect. 5 21
702 22.65 temperature 25.0 1440 > th dose dependent rect. 15 1
709 22.65 precipitation 0.1 270 < th dose dependent rect. 5 21
729 22.66 radiation 1.0 270 < th dose dependent sin 16 NA
769 22.69 precipitation 0.1 270 < th dose independent rect. 19 6
773 22.69 precipitation 0.1 270 < th dose dependent rect. 19 6
785 22.70 wind 9.0 90 < th dose dependent rect. 19 8
896 22.77 temperature 30.0 270 < th dose independent rect. 6 19
897 22.77 atmosphere 995.0 10 > th dose independent rect. 8 19
970 22.80 humidity 50.0 270 > th dose independent rect. 6 8
982 22.80 humidity 50.0 270 > th dose dependent rect. 1 5
993 22.81 wind 9.0 1440 < th dose independent rect. 3 6
994 22.81 temperature 10.0 1440 > th dose independent rect. 3 6
997 22.81 humidity 50.0 1440 > th dose independent rect. 3 6
999 22.81 atmosphere 995.0 1440 > th dose independent rect. 3 6