Os02g0159700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0159700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Electron transport protein SCO1/SenC family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	8.36	(0.0254)	R²	:	0.793
β₁	:	-2.03	(0.0955)	R²_dD	:	0.235	R²_D	:	0.237
β₂	:	0.796	(0.0655)	R²_dC	:	0.0716	R²_C	:	-0.00313
β₃	:	2.41	(0.118)	R²_dE	:	0.253	R²_E	:	0.388
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.818	(0.0585)	R²_dN8	:	0.147	R²_N8	:	0.176
σ	:	0.463
deviance	:	99.03
__

_____

C
peak time of C	:	19.2
E
wheather	:	temperature
threshold	:	25.69
memory length	:	264
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
95.19	0.458	8.34	-1.88	0.794	2.4	1.07	-0.759	-0.785	18.6	25.97	216	--	--
95.6	0.455	8.35	-2	0.775	2.5	1.42	--	-0.803	18	26.11	166	--	--
97.62	0.46	8.34	-1.84	0.792	2.33	--	-1.16	-0.787	18.8	26.1	202	--	--
99.03	0.463	8.36	-2.03	0.796	2.41	--	--	-0.818	19.2	25.69	264	--	--
119.69	0.51	8.35	-2	--	2.27	--	-0.736	-0.931	--	24.34	115	--	--
184.54	0.637	8.47	-2.65	0.588	--	0.042	--	-1.34	21.3	--	--	--	--
184.54	0.636	8.47	-2.65	0.588	--	--	--	-1.34	21.4	--	--	--	--
120.44	0.511	8.37	-2.1	--	2.36	--	--	-0.955	--	24.27	116	--	--
196.09	0.652	8.28	--	0.932	3.22	--	--	-0.455	18.3	25.96	235	--	--
204.74	0.669	8.45	-2.65	--	--	--	--	-1.34	--	--	--	--	--
370.18	0.9	8.4	--	0.589	--	--	--	-1.05	21	--	--	--	--
202.4	0.663	8.31	--	--	2.69	--	--	-0.551	--	23.45	4542	--	--
390.1	0.922	8.39	--	--	--	--	--	-1.05	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	91.78	temperature	25	270	< th	dose dependent	rect.	10	22
11	95.38	temperature	15	90	> th	dose dependent	rect.	7	23
24	96.93	temperature	15	10	> th	dose dependent	rect.	7	23
32	97.90	temperature	25	270	< th	dose dependent	no	NA	NA
39	98.26	temperature	25	270	< th	dose dependent	rect.	15	23
45	98.68	temperature	25	270	< th	dose dependent	rect.	1	23
47	98.79	temperature	25	90	< th	dose dependent	rect.	3	23
56	99.44	temperature	25	270	< th	dose dependent	rect.	19	23
85	100.32	temperature	25	90	< th	dose dependent	rect.	21	23
93	100.71	temperature	30	10	< th	dose dependent	rect.	13	23
99	101.18	temperature	30	30	< th	dose dependent	rect.	5	23
101	101.30	temperature	25	270	< th	dose dependent	rect.	23	23
119	101.78	temperature	25	720	< th	dose dependent	rect.	9	16
161	102.68	temperature	25	30	< th	dose dependent	rect.	23	23
193	103.38	temperature	30	270	< th	dose dependent	sin	10	NA
205	103.54	temperature	25	720	< th	dose dependent	sin	17	NA
226	103.94	temperature	10	270	> th	dose dependent	sin	9	NA
374	106.67	temperature	10	90	> th	dose dependent	no	NA	NA
386	106.94	temperature	10	10	> th	dose dependent	no	NA	NA
437	107.93	temperature	15	270	> th	dose dependent	rect.	17	23
643	111.33	temperature	10	720	> th	dose dependent	rect.	15	14
686	111.93	temperature	10	720	> th	dose dependent	sin	13	NA
756	112.61	temperature	10	720	> th	dose dependent	rect.	15	17
863	114.00	temperature	15	90	> th	dose dependent	rect.	20	23
935	114.79	temperature	25	720	< th	dose independent	rect.	9	15