BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0159700 Os02g0159700|AK073907
         (197 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08950.1  | chr3:2727285-2729289 FORWARD LENGTH=335            279   9e-76
AT4G39740.1  | chr4:18435586-18437095 REVERSE LENGTH=277          172   9e-44

>AT3G08950.1 | chr3:2727285-2729289 FORWARD LENGTH=335
          Length = 334

 Score =  279 bits (713), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 130/188 (69%), Positives = 158/188 (84%), Gaps = 1/188 (0%)

Query: 11  TLKVDYYELKNRTS-AVKQEPSVGTAAIGGPFNLLNHDGKPVTQKDFFGKWTLLYFGFTH 69
           T K  + E  N+ S AVK+ PS G AAIGGPF+L+  DGK VT+K+  GKWT+LYFGFTH
Sbjct: 146 TQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDDGKRVTEKNLMGKWTILYFGFTH 205

Query: 70  CPDICPDELQKMALAIDKIKEKAKMEVVPVFITVDPERDTVEQVRDYVNEFHPNLIGLTG 129
           CPDICPDEL K+A AIDKIKE + ++VVPVFI+VDPERDTV+QV +YV EFHP LIGLTG
Sbjct: 206 CPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQVHEYVKEFHPKLIGLTG 265

Query: 130 TTDEIRKVARAYRVYYMKTEEEGSDYLVDHSIVMYLMNPKMEFVKFYGKNYDADSLADGI 189
           + +EI+ VAR+YRVYYMKTEEE SDYLVDHSIVMYLM+P+M FVKFYGKN+D DSL DG+
Sbjct: 266 SPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTDGV 325

Query: 190 IKELKGHQ 197
           +KE++ ++
Sbjct: 326 VKEIRQYR 333



>AT4G39740.1 | chr4:18435586-18437095 REVERSE LENGTH=277
          Length = 276

 Score =  172 bits (437), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 117/173 (67%)

Query: 21  NRTSAVKQEPSVGTAAIGGPFNLLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQK 80
           N         +V    IGGPF L++ + K VT+ DF GKW LLYFG++  PD+ P++L+ 
Sbjct: 99  NSGCGCGSNTTVKGPIIGGPFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKM 158

Query: 81  MALAIDKIKEKAKMEVVPVFITVDPERDTVEQVRDYVNEFHPNLIGLTGTTDEIRKVARA 140
           M+ A+DK++ K   +++PVF+T+DP+RDT   +  Y+ EF   ++GLTGT   +R++A+ 
Sbjct: 159 MSKAVDKLESKHNEKILPVFVTLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQE 218

Query: 141 YRVYYMKTEEEGSDYLVDHSIVMYLMNPKMEFVKFYGKNYDADSLADGIIKEL 193
           YRVY+ K +E+G DYLVD S  MYL+NPKME V+ +G  Y+ D L+  ++KE+
Sbjct: 219 YRVYFKKVQEDGEDYLVDTSHNMYLINPKMEIVRCFGVEYNPDELSQELLKEV 271



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,444,278
Number of extensions: 187177
Number of successful extensions: 501
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)