Os02g0158300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KpsF/GutQ family protein.
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Os02g0158300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KpsF/GutQ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 419.22 | 0.962 | 11 | -3.25 | 0.734 | -6.46 | 3.46 | -8.75 | -0.955 | 2.7 | 1.343 | 1479 | -- | -- |
| 430.72 | 0.967 | 11.1 | -3.58 | 1.21 | -5.2 | 2.64 | -- | -1.1 | 2.41 | 3.058 | 1530 | -- | -- |
| 437.63 | 0.974 | 11 | -3.14 | 0.703 | -5.26 | -- | -6.13 | -0.98 | 6.6 | 2.175 | 1442 | -- | -- |
| 443.86 | 0.981 | 11.1 | -4.02 | 0.667 | -4.6 | -- | -- | -1.25 | 6.24 | 3.155 | 1452 | -- | -- |
| 456.64 | 0.995 | 11.1 | -3.59 | -- | -5.11 | -- | -3.95 | -1.1 | -- | 2.55 | 1450 | -- | -- |
| 720.84 | 1.26 | 11 | -3.15 | 0.472 | -- | 3.3 | -- | -0.497 | 3.72 | -- | -- | -- | -- |
| 735.53 | 1.27 | 11 | -3.2 | 0.775 | -- | -- | -- | -0.518 | 6.76 | -- | -- | -- | -- |
| 466.44 | 1.01 | 11.1 | -4.03 | -- | -4.73 | -- | -- | -1.24 | -- | 3.135 | 1455 | -- | -- |
| 788.23 | 1.31 | 11 | -- | 0.912 | -2.93 | -- | -- | -0.85 | 8.26 | 7.952 | 2841 | -- | -- |
| 766.89 | 1.29 | 11 | -3.18 | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
| 1004.61 | 1.48 | 10.9 | -- | 0.738 | -- | -- | -- | -0.162 | 7.02 | -- | -- | -- | -- |
| 813.81 | 1.33 | 11 | -- | -- | -2.88 | -- | -- | -0.83 | -- | 8 | 2899 | -- | -- |
| 1033.26 | 1.5 | 10.9 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 405.25 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 2 | 406.34 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 3 | 407.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 4 | 407.73 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 5 | 407.76 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 15 | 409.17 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 20 | 409.68 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 39 | 421.75 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 58 | 429.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 69 | 436.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 73 | 437.71 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 74 | 437.87 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 77 | 438.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 79 | 438.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 81 | 438.35 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 82 | 438.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 86 | 438.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 87 | 438.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 14 |
| 90 | 438.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 91 | 438.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 94 | 438.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 97 | 438.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 101 | 438.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 102 | 438.84 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 117 | 438.91 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 129 | 439.15 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 131 | 439.18 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 148 | 439.59 | temperature | 30 | 14400 | < th | dose independent | sin | 15 | NA |
| 171 | 439.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 173 | 439.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 180 | 439.99 | temperature | 30 | 14400 | > th | dose independent | sin | 15 | NA |
| 183 | 440.12 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 210 | 440.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 211 | 440.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 212 | 440.56 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 213 | 440.58 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 219 | 440.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 224 | 440.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 225 | 440.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 245 | 440.79 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 292 | 440.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 293 | 440.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 318 | 441.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 319 | 441.07 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 324 | 441.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 340 | 441.19 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 342 | 441.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 346 | 441.38 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 352 | 441.48 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 359 | 441.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 376 | 441.86 | humidity | 60 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 424 | 442.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 478 | 442.90 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 494 | 443.24 | temperature | 25 | 14400 | > th | dose dependent | sin | 13 | NA |
| 546 | 443.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 592 | 444.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 620 | 444.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 621 | 444.44 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 624 | 444.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 21 |
| 626 | 444.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 627 | 444.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 629 | 444.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 638 | 444.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 645 | 444.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 19 |
| 659 | 444.47 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 670 | 444.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 19 |
| 697 | 444.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 698 | 444.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 17 |
| 757 | 444.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 833 | 445.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 837 | 445.28 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 932 | 445.40 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 939 | 445.46 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 948 | 445.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 996 | 445.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |