BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0158300 Os02g0158300|Os02g0158300
         (344 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54690.1  | chr3:20246586-20247810 FORWARD LENGTH=351          443   e-125

>AT3G54690.1 | chr3:20246586-20247810 FORWARD LENGTH=351
          Length = 350

 Score =  443 bits (1139), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/326 (68%), Positives = 263/326 (80%), Gaps = 4/326 (1%)

Query: 19  VAASDLAPLFGAQRRHLDHFFDRLDLSXXXXXXXXLVDAPGAVFFTGVGKSGIVARKLAQ 78
           ++  +L  LF +Q+  L+HFF  LDLS        L+   G VFFTGVGKS  VA K++Q
Sbjct: 29  ISHDNLLNLFKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKVSQ 88

Query: 79  TLASLGFTRAGFLSPVDALHGDIGSVFPGDLLVLLSKSGASDELLALAPCARAKGAHLIS 138
           TL SL F  +  LSP+DALHGDIG++ P D+LV  SKSGA++ELL L PCARAKGA L+S
Sbjct: 89  TLVSLSFRSSF-LSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKGAFLVS 147

Query: 139 LTSAASGADCPLAAVCDLNVHLPLQAEVCPFGLAPVTSTAIQMVFGDTVVAAIMEARRLS 198
           LTS +     PLA VCD+NVHLPLQ E+CPF LAPVTSTAIQMVFGDT+  A+M AR LS
Sbjct: 148 LTSVSGN---PLAGVCDMNVHLPLQRELCPFNLAPVTSTAIQMVFGDTIAVALMAARNLS 204

Query: 199 RDQYASNHPAGKIGKSLIFKVKDVMKKQNELPLCKEGDMIMDQLTELTSKGCGCLLVVDD 258
           +++YA+NHPAG+IGKSLIFKVKDVMKKQ ELP+CKEGD+IMDQL ELTSKGCGCLLVVD+
Sbjct: 205 KEEYAANHPAGRIGKSLIFKVKDVMKKQEELPVCKEGDLIMDQLVELTSKGCGCLLVVDE 264

Query: 259 EYHLIGTFTDGDLRRTLKASGQAIFNLTVGEMCNRHPRTITADAMAVQAMEKMESPPSPV 318
              LIGTFTDGDLRRTLKASG+AIF L+VGEMCNR PRTI  + MAV+AM+KMESPPSPV
Sbjct: 265 HSRLIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRKPRTIGPETMAVEAMKKMESPPSPV 324

Query: 319 QFLPVVDSNNVVCGIITLHGLVSAGL 344
           QFLPVV+ +N + GI+TLHGLVSAGL
Sbjct: 325 QFLPVVNEDNTLIGIVTLHGLVSAGL 350



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,945,056
Number of extensions: 269779
Number of successful extensions: 646
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)