Os02g0150900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1644 family protein.
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Os02g0150900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1644 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.29 | 0.269 | 12.1 | -0.139 | 0.703 | 0.532 | 0.729 | -1.08 | 0.0423 | 2.91 | 20 | 30 | -- | -- |
| 36 | 0.279 | 12.1 | -0.159 | 0.775 | 0.574 | -0.248 | -- | 0.0363 | 2.3 | 40.01 | 60 | -- | -- |
| 34.15 | 0.272 | 12.1 | -0.145 | 0.748 | 0.534 | -- | -0.678 | 0.0253 | 2.68 | 28.15 | 20 | -- | -- |
| 36.03 | 0.28 | 12.1 | -0.128 | 0.797 | 0.532 | -- | -- | 0.0222 | 2.45 | 37.91 | 20 | -- | -- |
| 38.04 | 0.287 | 12.1 | -0.0908 | -- | 1.03 | -- | -0.549 | 0.0613 | -- | 12.84 | 203 | -- | -- |
| 40.46 | 0.298 | 12.1 | -0.154 | 1.16 | -- | -0.333 | -- | -0.000595 | 1.66 | -- | -- | -- | -- |
| 40.89 | 0.299 | 12.1 | -0.143 | 1.17 | -- | -- | -- | 0.00115 | 1.69 | -- | -- | -- | -- |
| 38.78 | 0.29 | 12.1 | -0.129 | -- | 1.02 | -- | -- | 0.0298 | -- | 10 | 249 | -- | -- |
| 36.44 | 0.281 | 12.1 | -- | 0.79 | 0.534 | -- | -- | 0.0384 | 2.45 | 37.42 | 20 | -- | -- |
| 123.62 | 0.52 | 12.1 | -0.0961 | -- | -- | -- | -- | 0.0272 | -- | -- | -- | -- | -- |
| 41.44 | 0.301 | 12.1 | -- | 1.16 | -- | -- | -- | 0.0171 | 1.69 | -- | -- | -- | -- |
| 39.16 | 0.291 | 12.1 | -- | -- | 1.03 | -- | -- | 0.0504 | -- | 11.04 | 249 | -- | -- |
| 123.86 | 0.519 | 12.1 | -- | -- | -- | -- | -- | 0.0378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.88 | radiation | 20 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 3 | 32.12 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 9 | 32.42 | radiation | 20 | 30 | < th | dose dependent | sin | 21 | NA |
| 11 | 32.48 | radiation | 20 | 30 | < th | dose dependent | rect. | 6 | 16 |
| 18 | 32.54 | radiation | 20 | 30 | < th | dose dependent | rect. | 8 | 14 |
| 20 | 32.58 | radiation | 10 | 30 | < th | dose independent | rect. | 6 | 16 |
| 21 | 32.61 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 22 | 32.63 | radiation | 10 | 30 | < th | dose independent | sin | 21 | NA |
| 35 | 32.73 | radiation | 10 | 90 | < th | dose independent | rect. | 12 | 22 |
| 47 | 32.79 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 9 |
| 72 | 33.01 | radiation | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 83 | 33.08 | radiation | 10 | 10 | < th | dose independent | rect. | 17 | 23 |
| 131 | 33.29 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 136 | 33.30 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 148 | 33.35 | radiation | 10 | 30 | < th | dose independent | rect. | 4 | 18 |
| 159 | 33.39 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 19 |
| 163 | 33.41 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 166 | 33.43 | humidity | 70 | 30 | > th | dose independent | rect. | 13 | 9 |
| 180 | 33.48 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 18 |
| 181 | 33.48 | radiation | 20 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 188 | 33.51 | radiation | 10 | 10 | < th | dose independent | rect. | 17 | 21 |
| 194 | 33.52 | radiation | 30 | 10 | < th | dose independent | rect. | 13 | 9 |
| 229 | 33.61 | radiation | 30 | 10 | < th | dose dependent | rect. | 17 | 18 |
| 249 | 33.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 9 |
| 297 | 33.85 | humidity | 70 | 270 | > th | dose independent | rect. | 12 | 7 |
| 299 | 33.85 | radiation | 10 | 90 | < th | dose independent | rect. | 15 | 19 |
| 316 | 33.88 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 394 | 34.03 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 442 | 34.12 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 445 | 34.13 | radiation | 30 | 10 | < th | dose independent | rect. | 12 | 23 |
| 461 | 34.16 | radiation | 10 | 90 | < th | dose independent | rect. | 15 | 23 |
| 480 | 34.19 | radiation | 20 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 481 | 34.20 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 519 | 34.24 | radiation | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 539 | 34.28 | radiation | 10 | 30 | < th | dose independent | rect. | 9 | 23 |
| 543 | 34.28 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 544 | 34.28 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 558 | 34.29 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 562 | 34.29 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 582 | 34.32 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 658 | 34.33 | humidity | 50 | 30 | > th | dose dependent | rect. | 13 | 9 |
| 696 | 34.36 | radiation | 10 | 90 | < th | dose independent | rect. | 23 | 23 |
| 732 | 34.39 | radiation | 10 | 30 | > th | dose independent | sin | 21 | NA |
| 742 | 34.40 | radiation | 1 | 270 | > th | dose dependent | sin | 0 | NA |
| 762 | 34.42 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 782 | 34.45 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 23 |
| 786 | 34.45 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 789 | 34.46 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 13 |
| 797 | 34.47 | radiation | 10 | 10 | < th | dose independent | rect. | 17 | 19 |
| 856 | 34.52 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 907 | 34.58 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 921 | 34.61 | radiation | 30 | 270 | < th | dose independent | sin | 4 | NA |
| 983 | 34.66 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 9 |