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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0147100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.0391) R2 : 0.561
β1 : -1.5 (0.145) R2dD : 0.111 R2D : 0.0599
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.88 (0.146) R2dE : 0.413 R2E : 0.392
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.439 (0.0861) R2dN8 : 0.0363 R2N8 : 0.1
σ : 0.725
deviance : 242.63
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.08
memory length : 72
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.57 0.727 4.72 -1.44 0.303 2.78 -0.297 0.0252 0.466 18.1 21.26 12 -- --
239.57 0.721 4.72 -1.45 0.302 2.78 -0.297 -- 0.465 18.1 21.29 12 -- --
239.76 0.721 4.72 -1.46 0.299 2.8 -- -0.0641 0.459 18.4 21.29 12 -- --
239.77 0.721 4.72 -1.45 0.299 2.79 -- -- 0.462 18.4 21.27 12 -- --
243.35 0.727 4.72 -1.48 -- 2.95 -- -0.122 0.433 -- 21.3 28 -- --
359.97 0.889 4.61 -0.868 1.25 -- 0.376 -- 0.933 15.3 -- -- -- --
360.42 0.889 4.61 -0.861 1.25 -- -- -- 0.935 15.3 -- -- -- --
242.63 0.725 4.72 -1.5 -- 2.88 -- -- 0.439 -- 21.08 72 -- --
289.81 0.793 4.67 -- 0.454 2.31 -- -- 0.702 16.9 21.8 2 -- --
449.12 0.99 4.61 -0.914 -- -- -- -- 0.902 -- -- -- -- --
379.95 0.912 4.59 -- 1.27 -- -- -- 1.03 15.3 -- -- -- --
298.4 0.805 4.67 -- -- 2.61 -- -- 0.656 -- 21.9 2 -- --
471.15 1.01 4.59 -- -- -- -- -- 1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.55 temperature 20 10 > th dose dependent rect. 8 18
7 236.41 temperature 20 30 > th dose dependent rect. 3 23
9 236.95 temperature 20 10 > th dose dependent rect. 8 21
11 238.52 temperature 20 90 > th dose dependent rect. 8 20
12 238.86 temperature 20 90 > th dose dependent rect. 7 23
15 239.37 temperature 20 10 > th dose dependent rect. 8 23
22 240.09 temperature 20 10 > th dose dependent rect. 9 15
35 240.90 temperature 20 10 > th dose dependent no NA NA
36 241.03 temperature 20 270 > th dose dependent rect. 17 22
41 241.32 temperature 20 90 > th dose dependent rect. 19 23
54 242.20 temperature 30 270 < th dose dependent rect. 23 22
80 245.33 temperature 20 10 > th dose dependent rect. 21 23
86 246.11 temperature 30 10 < th dose dependent sin 22 NA
87 246.21 temperature 10 10 > th dose dependent no NA NA
89 246.21 temperature 30 90 < th dose dependent rect. 1 23
90 246.50 temperature 10 270 > th dose dependent rect. 17 23
94 246.56 temperature 30 90 < th dose dependent rect. 15 23
98 246.84 temperature 20 10 > th dose dependent sin 22 NA
110 247.70 temperature 30 90 < th dose dependent no NA NA
128 248.43 temperature 20 10 > th dose dependent rect. 1 23
130 248.66 temperature 20 10 > th dose dependent rect. 23 23
136 248.99 temperature 10 10 > th dose dependent sin 22 NA
170 250.19 temperature 30 90 < th dose dependent rect. 13 23
174 250.37 temperature 30 10 < th dose dependent rect. 1 23
179 250.48 temperature 30 30 < th dose dependent rect. 11 23
233 252.44 temperature 30 90 < th dose dependent rect. 9 23
292 254.59 temperature 30 30 < th dose dependent rect. 19 23
301 254.73 temperature 20 10 > th dose dependent rect. 17 23
412 259.07 temperature 30 10 < th dose dependent rect. 7 23
476 260.49 temperature 20 10 > th dose dependent rect. 15 23
484 260.58 temperature 30 90 < th dose dependent rect. 5 16
489 260.71 temperature 30 10 < th dose dependent rect. 6 14
568 262.61 temperature 20 10 > th dose dependent rect. 9 11
613 263.47 temperature 30 90 < th dose dependent rect. 5 23
776 265.88 temperature 30 10 < th dose dependent rect. 5 23
870 267.31 temperature 25 270 > th dose independent rect. 7 15
873 267.35 temperature 25 1440 < th dose dependent rect. 21 1
895 267.80 temperature 30 90 < th dose dependent rect. 5 18
951 268.36 temperature 25 270 < th dose independent rect. 2 19
973 268.66 temperature 20 720 > th dose dependent rect. 23 14