BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0147100 Os02g0147100|J090049K16
         (125 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24630.6  | chr5:8432523-8435682 REVERSE LENGTH=455            164   1e-41

>AT5G24630.6 | chr5:8432523-8435682 REVERSE LENGTH=455
          Length = 454

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 100/116 (86%), Gaps = 3/116 (2%)

Query: 2   LIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYKSTIVPSRTFCVVSVGQT 61
           L+EC+GDSIDLSGD+GAVGR+++S++     ++ LDLKGTIYKSTI+PSRTFCVV+VGQT
Sbjct: 289 LVECEGDSIDLSGDMGAVGRVVVSDTTG---DMYLDLKGTIYKSTIIPSRTFCVVNVGQT 345

Query: 62  EAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSDEEGDKLPEPHASQNDQN 117
           EAKIE+IM+DFIQL PQSN++EAETM+EGTL+GFTF+SD+E +K  +      DQ+
Sbjct: 346 EAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDESNKNAKTAVKPADQS 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,044,050
Number of extensions: 121086
Number of successful extensions: 329
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 105 (45.1 bits)