Os02g0146600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Eukaryotic initiation factor 4A (eIF4A) (eIF-4A).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0146600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Eukaryotic initiation factor 4A (eIF4A) (eIF-4A).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.59 | 0.233 | 13.4 | 0.606 | 0.34 | 0.191 | -0.076 | -1.18 | 0.139 | 21.8 | 19.6 | 2648 | -- | -- |
| 26.35 | 0.239 | 13.4 | 0.798 | 0.35 | 0.426 | -0.111 | -- | 0.192 | 21.7 | 19 | 2581 | -- | -- |
| 24.6 | 0.231 | 13.4 | 0.609 | 0.34 | 0.193 | -- | -1.17 | 0.139 | 21.8 | 19.6 | 2613 | -- | -- |
| 26.34 | 0.239 | 13.4 | 0.783 | 0.346 | 0.434 | -- | -- | 0.182 | 21.8 | 19 | 2575 | -- | -- |
| 31.27 | 0.26 | 13.4 | 0.608 | -- | 0.268 | -- | -1.05 | 0.13 | -- | 19.6 | 2434 | -- | -- |
| 29.94 | 0.257 | 13.3 | 0.991 | 0.346 | -- | -0.122 | -- | 0.272 | 22.1 | -- | -- | -- | -- |
| 30 | 0.256 | 13.3 | 0.996 | 0.348 | -- | -- | -- | 0.272 | 22 | -- | -- | -- | -- |
| 32.56 | 0.266 | 13.4 | 0.748 | -- | 0.523 | -- | -- | 0.168 | -- | 18.82 | 2360 | -- | -- |
| 31.46 | 0.261 | 13.4 | -- | 0.314 | 0.805 | -- | -- | 0.044 | 21.9 | 18.2 | 24250 | -- | -- |
| 37.27 | 0.285 | 13.3 | 1 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 56.17 | 0.351 | 13.4 | -- | 0.352 | -- | -- | -- | 0.161 | 22.2 | -- | -- | -- | -- |
| 36.6 | 0.282 | 13.4 | -- | -- | 0.881 | -- | -- | -7.13e-05 | -- | 16.54 | 47073 | -- | -- |
| 63.68 | 0.372 | 13.4 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.20 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 24.24 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 3 | 24.31 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 4 | 24.33 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 7 | 24.43 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 8 | 24.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 12 | 24.55 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 17 | 24.57 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 18 | 24.59 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 34 | 24.65 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 37 | 24.65 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 46 | 24.69 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 49 | 24.70 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 60 | 24.74 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 79 | 24.79 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 90 | 24.81 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 178 | 24.93 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 235 | 24.99 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 237 | 24.99 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 324 | 25.09 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 467 | 25.21 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 578 | 25.30 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 626 | 25.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 641 | 25.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 660 | 25.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 661 | 25.36 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 677 | 25.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 733 | 25.39 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 737 | 25.39 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 759 | 25.41 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 770 | 25.41 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 787 | 25.43 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 832 | 25.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 838 | 25.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 848 | 25.46 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 851 | 25.46 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 878 | 25.48 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 884 | 25.48 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 887 | 25.48 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 919 | 25.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |