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Os02g0140500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.04 (0.0355) R2 : 0.786
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.14 (0.0928) R2dC : 0.0706 R2C : -0.0947
β3 : 1.66 (0.116) R2dE : 0.0962 R2E : -0.0567
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.62 (0.0749) R2dN8 : 0.75 R2N8 : 0.626
σ : 0.667
deviance : 204.98
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_____
C
peak time of C : 5.21
E
wheather : temperature
threshold : 25.3
memory length : 986
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.14 0.644 7.17 -1.5 1.32 2.37 1.02 -5.41 2.33 5.38 25.36 914 -- --
195.94 0.652 7.05 -0.502 1.14 1.78 1.08 -- 2.57 5.19 25.1 981 -- --
190.39 0.643 7.19 -1.64 1.32 2.46 -- -6.18 2.32 5.47 25.57 928 -- --
199.21 0.657 7.05 -0.48 1.15 1.77 -- -- 2.57 5.28 25.2 987 -- --
246.59 0.731 7.24 -1.76 -- 2.32 -- -5.25 2.2 -- 25.05 1167 -- --
278.37 0.782 7.03 0.0057 1.13 -- 1.5 -- 2.71 3.63 -- -- -- --
285.1 0.791 7.03 -0.0183 1.14 -- -- -- 2.7 3.76 -- -- -- --
249.85 0.736 7.08 -0.49 -- 1.74 -- -- 2.52 -- 24.77 1174 -- --
204.98 0.667 7.04 -- 1.14 1.66 -- -- 2.62 5.21 25.3 986 -- --
356.77 0.883 7.04 0.029 -- -- -- -- 2.73 -- -- -- -- --
285.11 0.79 7.03 -- 1.14 -- -- -- 2.7 3.76 -- -- -- --
256.16 0.745 7.07 -- -- 1.63 -- -- 2.6 -- 24.9 1174 -- --
356.79 0.882 7.04 -- -- -- -- -- 2.73 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.11 temperature 25 720 > th dose dependent sin 17 NA
5 190.98 temperature 25 720 > th dose dependent rect. 11 18
9 191.14 temperature 25 720 > th dose dependent rect. 11 13
11 191.17 temperature 25 720 > th dose dependent rect. 13 10
16 191.37 temperature 25 720 > th dose dependent rect. 13 16
32 191.85 temperature 25 720 > th dose dependent rect. 13 19
34 192.02 radiation 1 720 > th dose independent rect. 17 13
107 194.55 radiation 1 14400 < th dose dependent rect. 18 11
118 194.85 radiation 1 14400 < th dose dependent rect. 18 9
119 194.86 radiation 1 14400 < th dose dependent rect. 18 1
120 194.86 radiation 1 14400 < th dose dependent rect. 18 7
139 195.37 radiation 1 14400 < th dose independent rect. 18 11
143 195.57 humidity 90 43200 > th dose independent rect. 22 1
145 195.60 radiation 1 14400 < th dose independent rect. 18 9
148 195.64 radiation 1 14400 < th dose independent rect. 18 1
149 195.66 radiation 1 14400 < th dose independent rect. 18 7
152 195.76 radiation 20 14400 > th dose independent rect. 16 15
153 195.77 humidity 90 43200 > th dose independent rect. 21 3
154 195.78 radiation 1 14400 > th dose independent rect. 18 11
162 195.91 humidity 90 14400 < th dose independent rect. 21 6
167 196.02 temperature 25 720 > th dose dependent no NA NA
168 196.03 radiation 1 14400 > th dose independent rect. 18 1
179 196.06 temperature 25 720 > th dose dependent rect. 2 23
187 196.13 humidity 90 43200 > th dose independent rect. 16 8
221 196.62 radiation 1 43200 < th dose dependent rect. 24 5
228 196.70 radiation 1 43200 < th dose dependent rect. 2 3
234 196.79 radiation 1 43200 < th dose dependent rect. 4 1
248 196.98 radiation 1 720 > th dose independent rect. 9 21
251 196.99 humidity 80 43200 > th dose independent rect. 14 1
253 196.99 humidity 90 43200 < th dose independent rect. 16 5
276 197.07 radiation 1 43200 < th dose dependent rect. 21 8
291 197.15 humidity 90 43200 > th dose dependent rect. 20 4
299 197.27 radiation 1 14400 > th dose dependent rect. 17 1
307 197.35 humidity 90 43200 < th dose independent rect. 18 1
315 197.40 radiation 30 14400 > th dose independent rect. 15 17
328 197.45 humidity 90 43200 > th dose dependent rect. 16 8
342 197.53 humidity 80 43200 < th dose independent rect. 14 1
343 197.53 humidity 90 43200 > th dose dependent rect. 22 1
353 197.58 radiation 30 14400 < th dose independent rect. 15 1
359 197.63 temperature 25 720 > th dose dependent rect. 20 23
370 197.76 humidity 90 43200 > th dose independent rect. 9 15
376 197.81 humidity 80 43200 > th dose independent rect. 11 4
387 197.88 humidity 80 43200 > th dose independent rect. 11 6
397 197.97 radiation 30 14400 < th dose independent rect. 15 12
403 197.99 atmosphere 1005 43200 > th dose independent rect. 16 1
405 197.99 radiation 30 14400 < th dose independent rect. 15 10
454 198.19 atmosphere 1005 43200 < th dose independent rect. 16 1
478 198.36 temperature 30 14400 < th dose dependent rect. 2 1
481 198.38 humidity 90 43200 > th dose independent sin 17 NA
494 198.46 temperature 10 14400 > th dose dependent rect. 2 1
506 198.52 temperature 30 14400 < th dose dependent rect. 22 5
516 198.58 temperature 10 14400 > th dose dependent rect. 22 5
518 198.59 humidity 90 720 < th dose dependent rect. 16 12
566 198.81 temperature 10 14400 > th dose dependent rect. 23 1
568 198.81 temperature 30 14400 < th dose dependent rect. 22 8
571 198.82 humidity 80 43200 > th dose dependent rect. 17 1
580 198.83 temperature 10 14400 > th dose dependent rect. 22 8
585 198.85 humidity 90 43200 > th dose independent rect. 18 1
592 198.87 temperature 25 14400 > th dose dependent rect. 16 1
631 198.97 temperature 25 14400 > th dose independent rect. 16 14
659 199.04 temperature 10 14400 > th dose dependent rect. 5 1
664 199.05 temperature 25 14400 < th dose independent rect. 16 13
686 199.08 radiation 20 14400 > th dose dependent rect. 16 15
688 199.09 humidity 90 43200 < th dose independent rect. 9 14
689 199.09 temperature 30 14400 < th dose dependent rect. 5 1
692 199.10 humidity 90 43200 > th dose dependent sin 17 NA
698 199.12 radiation 1 14400 < th dose dependent sin 15 NA
750 199.24 radiation 20 14400 > th dose independent rect. 16 1
768 199.29 humidity 90 43200 < th dose independent sin 17 NA
813 199.34 humidity 90 43200 < th dose independent rect. 9 16
838 199.41 temperature 25 43200 < th dose independent rect. 17 1
930 199.56 temperature 25 43200 > th dose independent rect. 17 1
937 199.57 temperature 25 14400 > th dose independent rect. 23 13
988 199.64 temperature 25 14400 < th dose independent rect. 23 13
993 199.64 humidity 80 43200 > th dose dependent rect. 10 9