BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0140500 Os02g0140500|AK066900
(637 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48120.1 | chr1:17774238-17779624 REVERSE LENGTH=1341 137 3e-32
AT2G04865.1 | chr2:1712149-1714599 FORWARD LENGTH=668 102 5e-22
AT2G25010.1 | chr2:10631691-10633547 FORWARD LENGTH=510 91 2e-18
AT1G17930.1 | chr1:6166638-6168432 REVERSE LENGTH=479 86 6e-17
>AT1G48120.1 | chr1:17774238-17779624 REVERSE LENGTH=1341
Length = 1340
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 176/382 (46%), Gaps = 35/382 (9%)
Query: 1 RPETHTFHLPCGEMAPTLQDVSYXXXXXXXXXXXXXXDG--VFGWKEDITARFEQVMRLP 58
RPETHTFHLP GE+ TLQDV+ DG V G + A + +
Sbjct: 93 RPETHTFHLPAGEITVTLQDVNILLGLRV--------DGPAVTGSTKYNWADLCEDLLGH 144
Query: 59 HLGPTNTLPPYSTVGPSKAWLLQFTADLLHPDADDYSVRRSLEAYLLWLFGWVMFTSTHG 118
GP + + ++ AWL + +L D D+ +++ A++L L ++
Sbjct: 145 RPGPKDLHGSHVSL----AWLRENFRNL-PADPDEVTLKCHTRAFVLALMSGFLYGDKSK 199
Query: 119 HAVDFRLVHYARSIADAQPQDVPQWSWGSAVLAATYRALCEACTKTDAGAIIAGCPMLLQ 178
H V + R +V + SWGSA LA YR LC A +T + I G +LLQ
Sbjct: 200 HDVALTFLPLLRDF-----DEVAKLSWGSATLALLYRELCRASKRT--VSTICGPLVLLQ 252
Query: 179 LWAAERFAIGRPVVDSAPYGVGRSAQWPEDGPTMGTYWCRRGRRYAHVQVRRGYPDFVFE 238
LWA ER +GRP VG S DGP CR +H + RG DF +
Sbjct: 253 LWAWERLHVGRP---GRLKDVGASYMDGIDGPLPDPLGCRWRASLSHKENPRGGLDFYRD 309
Query: 239 -FDRLQPSDVIWEPYTEEAVAARAPLGLSSLCTRDQAYWLTILPMVFDIFVEPHCPQRVM 297
FD+ + VIW+PYT + +A + PL +C + W T+ P++ VE H P RV+
Sbjct: 310 QFDQQKDEQVIWQPYTPDLLA-KIPL----ICVSGENIWRTVAPLICFDVVEWHRPDRVL 364
Query: 298 RQFGLRQVFPGNVQPTVLPADHSLTRRGQLAGALWAPRVQQYVDDWVLATEEVINELFPH 357
RQFGL Q P A H++ +RG+ + W+ R +++ W V++
Sbjct: 365 RQFGLHQTIPAPCDNE--KALHAIDKRGK-SEYDWSARHSRHIGLWEARVSSVVSGEPEC 421
Query: 358 TEENYRD-YLRWYLPRTRARVT 378
+ +Y D Y+ WY TR ++
Sbjct: 422 SPMDYNDPYMEWYRRITRRIIS 443
>AT2G04865.1 | chr2:1712149-1714599 FORWARD LENGTH=668
Length = 667
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 161/386 (41%), Gaps = 61/386 (15%)
Query: 1 RPETHTFHLPCGEMAPTLQDVSYXXXXXXXXXXXXXXDG--VFGWKEDITARFEQVMRLP 58
R ET+TFH GEM TL+D++ DG V G +T +
Sbjct: 86 RRETNTFHFTVGEMTVTLEDIALLLGLGI--------DGKPVIG----LTYTTCSAVCER 133
Query: 59 HLGPTNTLPPYSTVGPSKAWLLQFTADLLHPDADDYS---VRRSLEAYLLWLFGWVMFTS 115
+LG + P S L + D DD S V R AYLL+L G +F++
Sbjct: 134 YLGKS----PASNSASGGMVKLSWLKDNFSECPDDASFEEVERRTRAYLLYLVGSTIFST 189
Query: 116 THGHAVDFRLVHYARSIADAQPQDVPQWSWGSAVLAATYRALCEACTKTDAGAIIAGCPM 175
T G+ V + DA ++WG+A LA YRAL A K+ + I GC
Sbjct: 190 TTGNKVPVMYLPLFEDFDDA-----GTFAWGAAALAFLYRALGNASVKSQS--TICGCLT 242
Query: 176 LLQLWAAERFAIGRPVVDSAPYGVGRSAQWPEDGPTMGTYWCRRGRRYAHVQVRRGYPDF 235
LLQ W+ IGRP ++ P Q+P W +G++ R D
Sbjct: 243 LLQCWSYYHLNIGRPKLNREPI----HDQFP-----FVLKW--KGKQNGPTANR----DV 287
Query: 236 VF---EFDRLQPSDVIWEPYTEEAVAARAP-LGLSSLCTRDQAYWLTILPMVFDIFVEPH 291
VF D ++P+DV+W PY + + S L R + ++ FD E H
Sbjct: 288 VFYRKALDVMKPTDVVWLPYENMNGGDMSDRMRKSLLLGRSKTMLIS-----FDK-AERH 341
Query: 292 CPQRVMRQFGLRQVFPGNVQPTVLPADHSLTRRGQLAGALWAPRVQQYVDDWVLATEEVI 351
P R +QF L Q P +VQ V + RG G + +++ + +W + E ++
Sbjct: 342 LPDRCRKQFDLFQDIPADVQRWVRKS------RGVDGGVDLSNKMESELSEWEMRWENIV 395
Query: 352 NELFPHTEENYRDYLRWYLPRTRARV 377
+ +E DY+RWYL TR V
Sbjct: 396 PDDVQGVDE--ADYMRWYLGITRKIV 419
>AT2G25010.1 | chr2:10631691-10633547 FORWARD LENGTH=510
Length = 509
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 134/353 (37%), Gaps = 60/353 (16%)
Query: 1 RPETHTFHLPCGEMAPTLQDVSYXXXXXXXXXXXXXXDGVFGWKEDITARFEQVMRLPHL 60
R ET+TFHLP GEM TL +V+ D + G K + RL
Sbjct: 84 RRETNTFHLPLGEMTITLDEVAL------VLGLEIDGDPIVGSKVGDEVAMDMCGRLLGK 137
Query: 61 GPTNTLPPYSTVGPSKAWLLQFTADLLHPDADDYSVRRSLEAYLLWLFGWVMFTSTHGHA 120
P+ + W L+ T DA V+ AYLL+L G +F +T G
Sbjct: 138 LPSAANKEVNCSRVKLNW-LKRTFSECPEDASFDVVKCHTRAYLLYLIGSTIFATTDGDK 196
Query: 121 VDFRLVHYARSIADAQPQDVPQWSWGSAVLAATYRALCEACTKTDAGAIIAGCPMLLQLW 180
V + + A +++WG+A LA YRAL A K+ + I GC LLQ W
Sbjct: 197 VSVKYLPLFEDFDQA-----GRYAWGAAALACLYRALGNASLKSQSN--ICGCLTLLQCW 249
Query: 181 AAERFAIGRPVVDSAPYGVGRSAQWPEDGPTMGTYWCRRGRRYAHVQVRRGYPDFVFEFD 240
+ IGRP A + + W +G R + ++ E D
Sbjct: 250 SYFHLDIGRPEKSEACF-------------PLALLWKGKGSRS-----KTDLSEYRRELD 291
Query: 241 RLQPSDVIWEPYTEEA------VAARAPLGLSSLCTRDQAYWLTILPMVFDIFVEPHCPQ 294
L PS + W PY + A+ LG S +V +E H P
Sbjct: 292 DLDPSKITWCPYERFENLIPPHIKAKLILGRSK------------TTLVCFEKIELHFPD 339
Query: 295 RVMRQFGLRQVFPGNVQ------PTVLPADHSLTRRGQLAGALWAPRVQQYVD 341
R +RQFG RQ P V+ + D S++ LA WA R VD
Sbjct: 340 RCLRQFGKRQPIPLKVKRRDRKNRRLDDLDTSMS----LACEEWAERGDHIVD 388
>AT1G17930.1 | chr1:6166638-6168432 REVERSE LENGTH=479
Length = 478
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 138/348 (39%), Gaps = 50/348 (14%)
Query: 1 RPETHTFHLPCGEMAPTLQDVSYXXXXXXXXXXXXXXDG--VFGWKEDITARFEQVMRLP 58
R ET+TFH PCGEM TL +VS DG V G KE + +RL
Sbjct: 75 RRETNTFHFPCGEMTITLDEVSL--------ILGLAVDGKPVVGVKEKDEDPSQVCLRLL 126
Query: 59 HLGPTNTLPPYSTVGPSKAWLLQFTADLLHPDADDYSVRRSLEAYLLWLFGWVMFTSTHG 118
P L WL + A+ A + AYL+++ G +F +T
Sbjct: 127 GKLPKGELSGNRVTAK---WLKESFAE-CPKGATMKEIEYHTRAYLIYIVGSTIFATTDP 182
Query: 119 HAVDFRLVHYARSIADAQPQDVPQWSWGSAVLAATYRALCEACTKTDAGAIIAGCPMLLQ 178
+ V Y D + +++WG+A LA YR + A ++ +II GC LLQ
Sbjct: 183 SKIS---VDYLILFEDFEK--AGEYAWGAAALAFLYRQIGNASQRSQ--SIIGGCLTLLQ 235
Query: 179 LWAAERFAIGRPVVDSAPYGVGRSAQWPEDGPTMGTYWCRRGRRYAHVQVRRGYPDFVFE 238
W+ I RP + Q+P + W +GR+ Q R F +
Sbjct: 236 CWSYFHLNIDRP--------KRTTRQFP-----LALLW--KGRQ----QSRSKNDLFKYR 276
Query: 239 --FDRLQPSDVIWEPYTEEAVAARAPLGLSSLCTRDQAYWLTILPMVFDIFVEPHCPQRV 296
D L PS+V W P+ + + L R + I P V VE H P R
Sbjct: 277 KALDDLDPSNVSWCPFEGDLDIVPQSFKDNLLLGRSRTK--LIGPKV----VEWHFPDRC 330
Query: 297 MRQFGLRQVFPGNVQPTVLPADH--SLTRRGQLAGALWAPRVQQYVDD 342
M+QFGL QV PG V P +H L A W R + V++
Sbjct: 331 MKQFGLCQVIPGEVPPRKNEKNHDEDLLEDMNTADEEWMRRRENIVEN 378
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,572,293
Number of extensions: 555794
Number of successful extensions: 1811
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1801
Number of HSP's successfully gapped: 4
Length of query: 637
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 532
Effective length of database: 8,227,889
Effective search space: 4377236948
Effective search space used: 4377236948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)