Os02g0139500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cycloartenol synthase (EC 5.4.99.8).
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Os02g0139500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cycloartenol synthase (EC 5.4.99.8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.31 | 0.431 | 7.77 | -1.07 | 0.47 | 0.828 | -0.191 | 2.5 | 0.297 | 0.259 | 29.6 | 251 | -- | -- |
| 85.66 | 0.431 | 7.75 | -0.803 | 0.476 | 1.09 | -0.128 | -- | 0.307 | 0.455 | 29.8 | 227 | -- | -- |
| 84.46 | 0.428 | 7.77 | -1.05 | 0.469 | 0.832 | -- | 2.42 | 0.299 | 0.268 | 29.6 | 250 | -- | -- |
| 85.73 | 0.431 | 7.74 | -0.794 | 0.471 | 1.1 | -- | -- | 0.305 | 0.405 | 29.8 | 228 | -- | -- |
| 93.17 | 0.45 | 7.75 | -1.12 | -- | 0.871 | -- | 2.73 | 0.35 | -- | 28.9 | 193 | -- | -- |
| 115.16 | 0.503 | 7.73 | -0.955 | 0.733 | -- | 0.32 | -- | 0.337 | 2.58 | -- | -- | -- | -- |
| 115.51 | 0.503 | 7.73 | -0.963 | 0.732 | -- | -- | -- | 0.335 | 2.5 | -- | -- | -- | -- |
| 96.53 | 0.458 | 7.71 | -0.773 | -- | 0.975 | -- | -- | 0.412 | -- | 28.88 | 175 | -- | -- |
| 101.95 | 0.47 | 7.73 | -- | 0.465 | 1.24 | -- | -- | 0.387 | 23.8 | 29.7 | 265 | -- | -- |
| 147.06 | 0.567 | 7.73 | -0.932 | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
| 139.95 | 0.553 | 7.71 | -- | 0.714 | -- | -- | -- | 0.443 | 2.48 | -- | -- | -- | -- |
| 112.07 | 0.493 | 7.69 | -- | -- | 1.04 | -- | -- | 0.501 | -- | 28.88 | 176 | -- | -- |
| 169.97 | 0.609 | 7.7 | -- | -- | -- | -- | -- | 0.457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.53 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 3 | 83.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 14 |
| 4 | 84.00 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 11 |
| 6 | 84.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 8 | 84.21 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 13 | 84.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 25 | 84.62 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 36 | 84.88 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 42 | 84.95 | temperature | 30.0 | 270 | < th | dose independent | sin | 1 | NA |
| 46 | 84.98 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 60 | 85.23 | temperature | 30.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 62 | 85.24 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 68 | 85.28 | temperature | 30.0 | 270 | > th | dose independent | sin | 1 | NA |
| 99 | 85.65 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 103 | 85.66 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 104 | 85.67 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 107 | 85.68 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 122 | 85.78 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 177 | 85.95 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 180 | 85.97 | temperature | 25.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 206 | 86.12 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |
| 322 | 86.18 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 418 | 86.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 421 | 86.57 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 434 | 86.64 | temperature | 30.0 | 720 | < th | dose independent | sin | 6 | NA |
| 445 | 86.70 | temperature | 30.0 | 720 | > th | dose independent | sin | 7 | NA |
| 521 | 87.08 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 523 | 87.08 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 536 | 87.14 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 4 |
| 595 | 87.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 15 |
| 601 | 87.40 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 6 |
| 613 | 87.50 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 11 |
| 855 | 88.47 | temperature | 10.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 903 | 88.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 904 | 88.65 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 927 | 88.71 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 7 | NA |
| 940 | 88.77 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 961 | 88.85 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |