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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0136000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant regulator RWP-RK domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0714) R2 : 0.832
β1 : -4.94 (0.33) R2dD : 0.424 R2D : 0.312
β2 : 0.664 (0.0979) R2dC : 0.0157 R2C : -0.143
β3 : -1.66 (0.484) R2dE : 0.0504 R2E : -0.587
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -19.3 (1.23) R2dD*E : 0.698 R2D*E : 0.591
γ1 : -0.413 (0.103) R2dN8 : 0.0133 R2N8 : -0.161
σ : 0.744
deviance : 254.87
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_____
C
peak time of C : 2.6
E
wheather : radiation
threshold : 0.8041
memory length : 22263
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 3.06

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.22 0.772 3.48 -4.72 0.665 -1.97 -0.681 -19.3 -0.456 2.43 1.207 15774 18 2.96
380.11 0.908 4.34 -5.75 0.733 -2.5 0.235 -- -1.15 1.12 -0.01831 47520 18.7 1.15
254.87 0.744 3.47 -4.94 0.664 -1.66 -- -19.3 -0.413 2.6 0.8041 22263 18.1 3.06
346.94 0.868 4.4 -5.72 0.634 -2.58 -- -- -0.757 1.19 -11.88 47519 18.8 2.93
270.87 0.767 3.46 -3.54 -- -0.566 -- -17.4 -0.305 -- 1.346 22209 18.1 1.21
609.66 1.16 4.52 -5.6 0.594 -- -0.897 -- -1.55 2.56 -- -- -- --
612.3 1.16 4.52 -5.58 0.589 -- -- -- -1.54 2.14 -- -- -- --
367.55 0.893 4.4 -5.4 -- -2.62 -- -- -0.749 -- -11.31 47519 18.8 2.9
525.29 1.07 3.73 -- 0.638 -5.94 -- -- 1.08 1.9 -0.2364 47520 19 6.93
633.06 1.18 4.52 -5.55 -- -- -- -- -1.53 -- -- -- -- --
1432.62 1.77 4.38 -- 0.485 -- -- -- -0.921 1.89 -- -- -- --
499.11 1.04 4.06 -- -- -5.9 -- -- 0.479 -- -2.536e-08 47520 19 7.68
1446.83 1.78 4.38 -- -- -- -- -- -0.912 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.79 temperature 15 43200 < th dose independent rect. 24 16
35 215.32 temperature 15 43200 < th dose independent sin 4 NA
40 215.36 temperature 15 43200 > th dose independent rect. 10 18
41 215.37 temperature 15 43200 > th dose independent rect. 11 3
48 215.58 temperature 15 43200 < th dose independent rect. 10 21
52 215.66 temperature 15 43200 < th dose independent rect. 10 18
83 216.01 temperature 15 43200 < th dose independent rect. 5 23
89 216.12 temperature 15 43200 < th dose independent no NA NA
96 216.16 temperature 15 43200 < th dose independent rect. 13 23
98 216.18 temperature 15 43200 < th dose independent rect. 10 4
178 217.02 temperature 15 43200 > th dose independent rect. 24 19
193 217.13 temperature 15 43200 < th dose independent rect. 2 23
198 217.19 temperature 15 43200 > th dose independent rect. 22 21
213 217.30 temperature 15 43200 < th dose independent sin 13 NA
218 217.32 temperature 15 43200 < th dose independent rect. 4 10
230 217.39 temperature 15 43200 > th dose independent rect. 10 22
252 217.57 temperature 15 43200 < th dose independent rect. 24 9
254 217.57 temperature 15 43200 > th dose independent rect. 24 23
290 217.91 temperature 15 43200 > th dose independent no NA NA
298 217.96 temperature 15 43200 > th dose independent rect. 16 23
322 218.15 temperature 15 43200 < th dose independent rect. 5 7
331 218.17 temperature 15 43200 > th dose independent rect. 13 23
346 218.33 temperature 15 43200 > th dose independent sin 2 NA
391 218.81 temperature 15 43200 > th dose independent sin 15 NA
399 218.83 temperature 15 43200 < th dose dependent rect. 17 14
436 219.06 temperature 15 43200 < th dose dependent sin 13 NA
463 219.24 temperature 15 43200 < th dose independent rect. 24 2
510 219.51 temperature 15 43200 < th dose dependent rect. 10 20
552 219.82 temperature 15 43200 > th dose independent rect. 6 8
610 220.15 temperature 15 43200 < th dose independent rect. 24 4
693 220.69 temperature 15 43200 > th dose independent rect. 3 1
699 220.76 temperature 15 43200 > th dose independent rect. 1 1
712 220.82 temperature 15 43200 < th dose independent rect. 5 2
773 221.27 temperature 15 43200 > th dose independent rect. 1 3
776 221.28 temperature 15 43200 < th dose dependent no NA NA
861 222.28 temperature 15 43200 < th dose dependent rect. 2 23
862 222.28 temperature 15 43200 < th dose dependent rect. 4 23
936 223.36 temperature 15 43200 < th dose dependent rect. 4 3