BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0136000 Os02g0136000|J100045E24
(208 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24020.1 | chr4:12479904-12483822 FORWARD LENGTH=960 103 5e-23
AT1G64530.1 | chr1:23959820-23962896 FORWARD LENGTH=842 89 2e-18
AT2G43500.1 | chr2:18062715-18066450 FORWARD LENGTH=948 72 2e-13
AT3G59580.1 | chr3:22009652-22012721 FORWARD LENGTH=895 67 5e-12
AT1G76350.1 | chr1:28640143-28642817 FORWARD LENGTH=809 62 2e-10
AT1G20640.1 | chr1:7155201-7157986 FORWARD LENGTH=845 61 5e-10
AT4G35270.1 | chr4:16777657-16780824 REVERSE LENGTH=964 60 1e-09
AT2G17150.1 | chr2:7467049-7470533 REVERSE LENGTH=910 57 6e-09
AT4G38340.1 | chr4:17954710-17957828 FORWARD LENGTH=768 52 3e-07
>AT4G24020.1 | chr4:12479904-12483822 FORWARD LENGTH=960
Length = 959
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 74/129 (57%), Gaps = 14/129 (10%)
Query: 79 APPSHAKTALRKPPRCGNGDGVVTIKASHRGDIIRFRVPCSAGXXXXXXXXXXRLSLDAG 138
APP A G+ VTIKAS++ DIIRFR+ +G RL +DAG
Sbjct: 842 APPKEEAIANVACEPSGSEMRTVTIKASYKDDIIRFRISSGSGIMELKDEVAKRLKVDAG 901
Query: 139 AFDVKYLDDDHEWVLLSCDADFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVAD 198
FD+KYLDDD+EWVL++CDAD QECL++ P S T +VRL+V +V
Sbjct: 902 TFDIKYLDDDNEWVLIACDADLQECLEI----PRSSRTK----------IVRLLVHDVTT 947
Query: 199 NIGSSCASS 207
N+GSSC S+
Sbjct: 948 NLGSSCEST 956
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESV 35
MKRICRQHGI RWP RKI KVNRS+ K+KRV+ESV
Sbjct: 619 MKRICRQHGISRWPSRKIKKVNRSITKLKRVIESV 653
>AT1G64530.1 | chr1:23959820-23962896 FORWARD LENGTH=842
Length = 841
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 16/110 (14%)
Query: 100 VVTIKASHRGDIIRFRV-PCSAGXXXXXXXXXXRLSLDAGAFDVKYLDDDHEWVLLSCDA 158
+V+IKA++R DIIRF++ P S RL L+ AF++KYLDDD EWV +SCDA
Sbjct: 741 LVSIKATYREDIIRFKISPESVSITELKQQVAKRLKLETAAFELKYLDDDREWVSVSCDA 800
Query: 159 DFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVADNIGSSCASSD 208
D ECLD + AA +RL V +V N GSSC SS+
Sbjct: 801 DLSECLD---------------TSAAKANTLRLSVHDVTFNFGSSCESSE 835
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVN 36
MKRICRQHGI RWP RKI+KVNRSL ++K V++SV
Sbjct: 584 MKRICRQHGISRWPSRKINKVNRSLTRLKHVIDSVQ 619
>AT2G43500.1 | chr2:18062715-18066450 FORWARD LENGTH=948
Length = 947
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 97 GDGVVTIKASHRGDIIRFRVPCSAGXXXXXXXXXXRLSLDAGAFDVKYLDDDHEWVLLSC 156
G + +KAS+R D +RF+ S G R L G+F +KYLDD+ EWV+L
Sbjct: 844 GSTTLIVKASYREDTVRFKFEPSVGCPQLYKEVGKRFKLQDGSFQLKYLDDEEEWVMLVT 903
Query: 157 DADFQECLDVVPALPSMSVTARSGSGAAAPVVVRLMVQEVADNIGSSCASS 207
D+D QECL+++ + S V+ +V++++ +GSS S+
Sbjct: 904 DSDLQECLEILHGMGKHS--------------VKFLVRDLSAPLGSSGGSN 940
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVN 36
+KRICRQHGI RWP RKI+KVNRSL K++ V++SV
Sbjct: 631 LKRICRQHGIMRWPSRKINKVNRSLRKIQTVLDSVQ 666
>AT3G59580.1 | chr3:22009652-22012721 FORWARD LENGTH=895
Length = 894
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 100 VVTIKASHRGDIIRFRV-PCSAGXXXXXXXXXXRLSLDAGAFDVKYLDDDHEWVLLSCDA 158
+T+KA++R D +RF++ P G R L GAF +KYLDD+ EWV+L D+
Sbjct: 792 TLTVKATYREDTVRFKLDPYVVGCSQLYREVAKRFKLQEGAFQLKYLDDEEEWVMLVTDS 851
Query: 159 DFQECLDVVPALPSMSV 175
D EC +++ + +V
Sbjct: 852 DLHECFEILNGMRKHTV 868
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVN 36
+KRICRQHGI RWP RKI+KVNRSL K++ V++SV
Sbjct: 563 LKRICRQHGIMRWPSRKINKVNRSLRKIQTVLDSVQ 598
>AT1G76350.1 | chr1:28640143-28642817 FORWARD LENGTH=809
Length = 808
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 98 DGVVTIKASHRGDIIRFRVPCSAGXXXXXXXXXXRLSL-DAGAFDVKYLDDDHEWVLLSC 156
D + +K S+ + IRF++ S R S+ D +D+KYLD+D+EWVLL C
Sbjct: 708 DDFLRVKVSYEEEKIRFKMRNSHRLKDLLWEIAKRFSIEDVSRYDLKYLDEDNEWVLLRC 767
Query: 157 DADFQECLDVVPALPSMSV 175
D D +EC+DV + P ++
Sbjct: 768 DDDVEECVDVCRSFPGQTI 786
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVN 36
+KRICRQHGI RWP RKI KV SL K++RV++SV
Sbjct: 577 LKRICRQHGIQRWPSRKIKKVGHSLQKIQRVIDSVE 612
>AT1G20640.1 | chr1:7155201-7157986 FORWARD LENGTH=845
Length = 844
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 98 DGVVTIKASHRGDIIRFRVPCSAGXXXXXXXXXXRLSL-DAGAFDVKYLDDDHEWVLLSC 156
D + IK S+ + IR R+ S R S+ D +D+KYLD+D+EWVLL+C
Sbjct: 742 DDFLRIKVSYGEEKIRLRMRNSRRLRDLLWEIGKRFSIEDMSRYDLKYLDEDNEWVLLTC 801
Query: 157 DADFQECLDVVPALPSMSV 175
D D +EC+DV PS ++
Sbjct: 802 DEDVEECVDVCRTTPSHTI 820
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVN 36
+KRICRQHGI RWP RKI KV SL K++RV++SV
Sbjct: 586 LKRICRQHGIQRWPSRKIKKVGHSLQKIQRVIDSVQ 621
>AT4G35270.1 | chr4:16777657-16780824 REVERSE LENGTH=964
Length = 963
Score = 59.7 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 72 SSHGSCQAPPSHAKTALRKPPRCGNGDGVVTIKASHRGDIIRFRVPCSAGXXXXXXXXXX 131
S H + PP + + RK G +KA+ +RF + + G
Sbjct: 838 SEHPLFENPPRLPENSSRKL----KAGGASKVKATFGEAKVRFTLLPTWGFRELQHEIAR 893
Query: 132 RLSLDAGA-FDVKYLDDDHEWVLLSCDADFQECLDVVPALPSMSV 175
R ++D A FD+KYLDDD EWVLL+C+AD +EC+D+ + S ++
Sbjct: 894 RFNIDNIAPFDLKYLDDDKEWVLLTCEADLEECIDIYRSSQSRTI 938
Score = 54.3 bits (129), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESV 35
+KRICRQHGI RWP RKI KV SL K++ V++SV
Sbjct: 676 LKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSV 710
>AT2G17150.1 | chr2:7467049-7470533 REVERSE LENGTH=910
Length = 909
Score = 57.0 bits (136), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 99 GVVTIKASHRGDIIRFRVPCSAGXXXXXXXXXXRLSLD-AGAFDVKYLDDDHEWVLLSCD 157
G + +KA+ IRF + S G R ++D FD+KYLDDD EWVLL+C+
Sbjct: 810 GAIKVKATFGEARIRFTLLPSWGFAELKQEIARRFNIDDISWFDLKYLDDDKEWVLLTCE 869
Query: 158 ADFQECLDV 166
AD EC+D+
Sbjct: 870 ADLVECIDI 878
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESV 35
+KRICRQHGI RWP RKI KV SL K++ VM+SV
Sbjct: 636 LKRICRQHGIMRWPSRKIKKVGHSLKKLQLVMDSV 670
>AT4G38340.1 | chr4:17954710-17957828 FORWARD LENGTH=768
Length = 767
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 140 FDVKYLDDDHEWVLLSCDADFQECLDV 166
F +KYLDDD EWVLL+CDAD +EC+ V
Sbjct: 716 FSLKYLDDDQEWVLLTCDADLEECIQV 742
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 1 MKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVN 36
+KRICRQ+GI RWP RKI KV SL K++ VM+SV
Sbjct: 526 LKRICRQNGISRWPSRKIKKVGHSLRKLQVVMDSVE 561
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,856,611
Number of extensions: 125397
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 18
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)