Os02g0134000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dephospho-CoA kinase family protein.
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Os02g0134000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dephospho-CoA kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.03 | 0.396 | 9.12 | 0.171 | 1.15 | -0.707 | 0.0224 | 2.62 | 0.137 | 8.16 | 1.403 | 1503 | -- | -- |
| 76.96 | 0.409 | 9.12 | 0.417 | 1.16 | -0.874 | -0.318 | -- | 0.141 | 8.23 | 1.01 | 1486 | -- | -- |
| 70.8 | 0.392 | 9.12 | 0.179 | 1.14 | -0.722 | -- | 2.75 | 0.134 | 8 | 1.41 | 1534 | -- | -- |
| 75.02 | 0.403 | 9.12 | 0.324 | 1.12 | -1.11 | -- | -- | 0.136 | 8.19 | 0.354 | 1482 | -- | -- |
| 125.63 | 0.525 | 9.1 | 0.618 | -- | -0.598 | -- | 0.817 | 0.3 | -- | 1.48 | 1538 | -- | -- |
| 85.43 | 0.433 | 9.06 | 0.635 | 1.22 | -- | -0.475 | -- | 0.311 | 8.58 | -- | -- | -- | -- |
| 86.14 | 0.435 | 9.06 | 0.619 | 1.22 | -- | -- | -- | 0.31 | 8.52 | -- | -- | -- | -- |
| 129.98 | 0.533 | 9.1 | 0.621 | -- | -0.592 | -- | -- | 0.303 | -- | 1.48 | 1538 | -- | -- |
| 78.02 | 0.411 | 9.11 | -- | 1.11 | -1.26 | -- | -- | 0.125 | 8.21 | 0.2799 | 1476 | -- | -- |
| 169.6 | 0.609 | 9.09 | 0.624 | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
| 96.23 | 0.459 | 9.07 | -- | 1.22 | -- | -- | -- | 0.241 | 8.48 | -- | -- | -- | -- |
| 139.22 | 0.551 | 9.11 | -- | -- | -0.603 | -- | -- | 0.259 | -- | 0.2798 | 1504 | -- | -- |
| 179.87 | 0.626 | 9.11 | -- | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 2 | 70.55 | radiation | 1.0 | 720 | < th | dose independent | rect. | 21 | 22 |
| 5 | 71.00 | humidity | 90.0 | 720 | < th | dose independent | rect. | 9 | 7 |
| 6 | 71.04 | temperature | 25.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 7 | 71.10 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 13 | 71.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 20 | 71.37 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 22 | 71.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 28 | 71.69 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 30 | 71.75 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 33 | 71.80 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 37 | 71.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 38 | 71.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 52 | 71.86 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 58 | 71.87 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 62 | 71.89 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 102 | 72.04 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 125 | 72.16 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 126 | 72.17 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 15 |
| 127 | 72.17 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 129 | 72.21 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 139 | 72.34 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 145 | 72.36 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 150 | 72.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 160 | 72.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 161 | 72.42 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 167 | 72.46 | precipitation | 0.1 | 720 | < th | dose independent | sin | 23 | NA |
| 168 | 72.46 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 23 | NA |
| 174 | 72.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 175 | 72.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 194 | 72.53 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 218 | 72.59 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 219 | 72.59 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 22 |
| 221 | 72.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 224 | 72.60 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 238 | 72.68 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 252 | 72.70 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 271 | 72.74 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 314 | 72.85 | temperature | 15.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 324 | 72.89 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 337 | 72.90 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 353 | 72.91 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 360 | 72.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 362 | 72.94 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 375 | 72.97 | temperature | 15.0 | 720 | > th | dose independent | rect. | 4 | 17 |
| 378 | 72.97 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 386 | 72.99 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 388 | 72.99 | temperature | 10.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 391 | 72.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 393 | 73.00 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 401 | 73.00 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 402 | 73.00 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 405 | 73.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 422 | 73.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 426 | 73.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 430 | 73.06 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 436 | 73.06 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 438 | 73.07 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 18 |
| 450 | 73.08 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 460 | 73.10 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 462 | 73.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 467 | 73.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 471 | 73.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 474 | 73.10 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 476 | 73.10 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 496 | 73.12 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 508 | 73.12 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 532 | 73.17 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 551 | 73.20 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 555 | 73.21 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 604 | 73.22 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 617 | 73.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 730 | 73.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 757 | 73.37 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 768 | 73.38 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 772 | 73.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 786 | 73.40 | temperature | 15.0 | 720 | > th | dose independent | sin | 0 | NA |
| 789 | 73.40 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 22 |
| 795 | 73.41 | temperature | 15.0 | 90 | > th | dose independent | sin | 6 | NA |
| 816 | 73.43 | temperature | 15.0 | 90 | > th | dose independent | sin | 20 | NA |
| 818 | 73.43 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 835 | 73.46 | temperature | 15.0 | 270 | > th | dose independent | sin | 22 | NA |
| 836 | 73.46 | temperature | 15.0 | 270 | > th | dose independent | sin | 4 | NA |
| 839 | 73.46 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 850 | 73.48 | temperature | 15.0 | 90 | > th | dose independent | sin | 15 | NA |
| 855 | 73.48 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 19 |
| 858 | 73.48 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 864 | 73.49 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 887 | 73.52 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 908 | 73.54 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 929 | 73.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 944 | 73.57 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 23 |