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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0133900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF829, eukaryotic family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0203) R2 : 0.411
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.24 (0.0698) R2dE : 0.409 R2E : 0.411
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0106 (0.0429) R2dN8 : 9.05e-05 R2N8 : 0.00131
σ : 0.38
deviance : 66.64
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C
peak time of C : --
E
wheather : temperature
threshold : 24.61
memory length : 806
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.31 0.374 3.28 0.659 0.0759 0.946 0.0911 2.29 0.154 22.1 24.72 770 -- --
64.53 0.374 3.33 0.255 0.0965 1.11 0.466 -- 0.0639 20.2 25.11 841 -- --
63.3 0.371 3.28 0.676 0.0789 0.935 -- 2.38 0.156 21.4 24.64 784 -- --
65.15 0.376 3.33 0.244 0.0647 1.14 -- -- 0.0701 20.5 25.19 817 -- --
63.58 0.371 3.28 0.672 -- 0.988 -- 2.39 0.148 -- 24.55 780 -- --
92.53 0.451 3.32 0.535 0.447 -- 0.765 -- 0.153 20.6 -- -- -- --
94.42 0.455 3.32 0.511 0.445 -- -- -- 0.153 20.6 -- -- -- --
65.16 0.376 3.3 0.276 -- 1.2 -- -- 0.184 -- 27.55 822 -- --
66.64 0.38 3.34 -- 0.0418 1.2 -- -- 0.0248 20 24.98 821 -- --
105.55 0.48 3.31 0.509 -- -- -- -- 0.149 -- -- -- -- --
101.3 0.471 3.33 -- 0.443 -- -- -- 0.0958 20.7 -- -- -- --
66.64 0.38 3.34 -- -- 1.24 -- -- 0.0106 -- 24.61 806 -- --
112.39 0.495 3.32 -- -- -- -- -- 0.0922 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.53 temperature 15 720 > th dose dependent rect. 13 7
3 62.71 temperature 20 720 > th dose dependent sin 20 NA
5 62.81 temperature 25 720 > th dose dependent rect. 13 22
6 62.83 temperature 10 720 > th dose dependent sin 20 NA
14 62.96 temperature 20 720 > th dose dependent rect. 8 14
29 63.17 temperature 20 720 > th dose dependent rect. 10 10
42 63.25 temperature 30 720 < th dose independent rect. 11 10
43 63.25 temperature 25 720 > th dose dependent rect. 10 13
81 63.44 temperature 25 720 > th dose dependent rect. 4 20
123 63.54 temperature 25 720 > th dose dependent rect. 15 23
184 63.69 temperature 25 720 > th dose dependent no NA NA
189 63.70 temperature 30 720 > th dose independent sin 16 NA
206 63.79 temperature 30 720 < th dose independent sin 16 NA
230 63.86 temperature 30 720 < th dose independent rect. 11 16
236 63.87 temperature 25 720 > th dose dependent rect. 21 23
237 63.88 temperature 30 720 < th dose independent rect. 11 19
270 64.02 temperature 30 720 < th dose independent rect. 11 12
271 64.02 temperature 25 720 > th dose dependent rect. 15 4
299 64.16 temperature 30 720 > th dose independent rect. 12 7
322 64.25 temperature 30 720 < th dose independent rect. 9 14
412 64.57 temperature 30 720 < th dose independent rect. 15 15
425 64.63 temperature 30 720 < th dose independent rect. 15 8
428 64.64 temperature 30 720 < th dose independent rect. 9 22
442 64.71 temperature 30 720 < th dose independent rect. 1 22
486 64.84 temperature 30 720 < th dose independent rect. 11 23
489 64.87 temperature 30 720 > th dose independent rect. 15 19
502 64.92 temperature 30 720 < th dose independent rect. 4 17
506 64.94 temperature 20 1440 > th dose dependent rect. 16 1
540 65.08 temperature 30 720 < th dose independent rect. 1 20
544 65.09 temperature 30 720 < th dose independent rect. 15 22
573 65.19 temperature 30 720 > th dose independent rect. 15 4
605 65.27 temperature 30 720 < th dose independent rect. 4 19
627 65.32 temperature 30 720 > th dose independent rect. 16 23
641 65.35 temperature 30 720 < th dose independent rect. 22 23
665 65.38 temperature 30 720 < th dose independent rect. 4 23
701 65.51 temperature 30 720 < th dose independent no NA NA
720 65.56 temperature 30 720 > th dose independent no NA NA
920 65.94 temperature 30 720 < th dose independent rect. 20 23