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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0133700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SMC protein, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.06 (0.0355) R2 : 0.387
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.696 (0.0936) R2dC : 0.0766 R2C : 0.0187
β3 : 4.19 (0.306) R2dE : 0.258 R2E : 0.179
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.651 (0.0749) R2dN8 : 0.142 R2N8 : 0.0859
σ : 0.665
deviance : 204.08
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_____
C
peak time of C : 17.8
E
wheather : humidity
threshold : 93.87
memory length : 549
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.8
open length of G : 2.15

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.62 0.682 5.01 -0.113 0.691 2.54 0.512 -3.12 0.752 17.2 90.18 651 20.1 0.633
217.33 0.687 5.03 -0.162 0.662 2.79 0.977 -- 0.69 17 92 595 20.1 1.3
204.08 0.665 5.01 -0.171 0.69 2.89 -- -4.39 0.736 17.7 92.74 637 20.1 1.52
205.85 0.668 5.06 -0.261 0.68 3.47 -- -- 0.615 17.8 93.83 553 20.8 2.03
223.76 0.697 5.02 -0.153 -- 2.6 -- -4.03 0.68 -- 92.96 572 20.6 1.98
285.41 0.792 5.04 -0.158 0.557 -- 0.514 -- 0.598 18.6 -- -- -- --
285.92 0.792 5.04 -0.167 0.56 -- -- -- 0.599 18.9 -- -- -- --
227.37 0.702 5.02 -0.151 -- 3.95 -- -- 0.691 -- 93.94 554 20.8 1.93
204.08 0.665 5.06 -- 0.696 4.19 -- -- 0.651 17.8 93.87 549 20.8 2.15
302.37 0.813 5.03 -0.179 -- -- -- -- 0.588 -- -- -- -- --
286.66 0.792 5.04 -- 0.562 -- -- -- 0.617 18.9 -- -- -- --
227.1 0.702 5.02 -- -- 3.87 -- -- 0.665 -- 93.96 554 20.7 1.9
303.21 0.813 5.02 -- -- -- -- -- 0.608 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 222.30 humidity 90.0 720 > th dose dependent rect. 20 1
2 223.33 humidity 90.0 720 > th dose dependent rect. 20 3
4 224.45 humidity 80.0 1440 > th dose independent rect. 6 15
10 224.78 humidity 80.0 1440 > th dose independent rect. 2 19
11 224.78 radiation 1.0 1440 < th dose independent rect. 11 19
15 224.98 humidity 80.0 1440 < th dose independent rect. 7 13
30 225.38 radiation 1.0 1440 > th dose independent rect. 11 19
54 226.30 humidity 80.0 1440 > th dose independent sin 0 NA
64 226.74 humidity 80.0 1440 < th dose independent sin 1 NA
125 229.25 radiation 1.0 1440 < th dose dependent rect. 11 6
166 230.00 humidity 80.0 1440 > th dose independent rect. 11 9
196 230.81 radiation 1.0 1440 < th dose independent rect. 11 8
203 230.89 radiation 1.0 1440 < th dose independent rect. 11 13
225 231.28 humidity 60.0 1440 > th dose dependent rect. 11 11
236 231.37 radiation 1.0 1440 < th dose dependent rect. 11 18
240 231.46 radiation 1.0 1440 > th dose independent rect. 11 8
266 231.69 radiation 1.0 1440 < th dose independent sin 23 NA
281 231.82 radiation 1.0 1440 < th dose dependent rect. 11 13
283 231.83 radiation 1.0 1440 < th dose dependent rect. 11 11
286 231.84 humidity 80.0 1440 > th dose independent rect. 11 23
311 231.98 humidity 80.0 1440 < th dose independent rect. 11 9
364 232.37 radiation 1.0 1440 < th dose dependent sin 22 NA
366 232.40 radiation 1.0 1440 > th dose independent sin 23 NA
368 232.44 radiation 1.0 1440 < th dose independent rect. 14 1
370 232.44 radiation 1.0 1440 < th dose dependent rect. 14 1
373 232.46 radiation 1.0 1440 > th dose independent rect. 14 1
377 232.50 humidity 90.0 1440 < th dose dependent rect. 12 10
384 232.57 wind 7.0 43200 > th dose dependent rect. 14 4
395 232.71 humidity 80.0 720 > th dose independent rect. 18 1
398 232.76 humidity 90.0 1440 > th dose independent rect. 20 2
423 232.91 precipitation 0.1 270 > th dose independent rect. 2 2
451 233.08 precipitation 0.1 270 > th dose dependent rect. 2 2
459 233.16 humidity 60.0 1440 > th dose dependent rect. 12 1
462 233.17 humidity 80.0 1440 > th dose independent rect. 7 20
468 233.20 humidity 90.0 1440 < th dose dependent rect. 12 3
473 233.23 humidity 80.0 1440 < th dose independent rect. 11 23
476 233.24 radiation 1.0 1440 < th dose independent rect. 18 23
485 233.29 radiation 1.0 1440 > th dose independent rect. 18 23
501 233.40 humidity 90.0 1440 < th dose independent rect. 20 2
513 233.46 humidity 60.0 1440 > th dose dependent sin 20 NA
518 233.50 humidity 50.0 720 > th dose dependent rect. 16 10
530 233.57 humidity 80.0 1440 > th dose independent rect. 11 3
540 233.61 humidity 50.0 1440 > th dose dependent rect. 12 3
587 233.80 wind 7.0 43200 > th dose dependent rect. 15 2
601 233.89 wind 7.0 43200 < th dose independent rect. 17 1
628 233.98 humidity 80.0 1440 > th dose independent no NA NA
652 234.09 humidity 60.0 1440 > th dose dependent rect. 3 19
656 234.12 humidity 50.0 1440 > th dose dependent rect. 11 18
661 234.17 humidity 80.0 1440 < th dose independent rect. 18 1
674 234.18 humidity 80.0 1440 > th dose independent rect. 17 23
700 234.28 wind 7.0 43200 > th dose independent rect. 12 8
781 234.62 wind 7.0 43200 > th dose independent rect. 12 6
791 234.65 humidity 90.0 1440 < th dose dependent rect. 12 21
796 234.67 humidity 90.0 1440 < th dose dependent sin 20 NA
816 234.74 humidity 80.0 1440 < th dose independent rect. 11 3
821 234.75 radiation 1.0 1440 < th dose independent rect. 2 17
824 234.77 radiation 1.0 1440 < th dose independent rect. 5 14
829 234.77 radiation 1.0 1440 < th dose independent rect. 23 20
832 234.77 radiation 1.0 1440 < th dose independent rect. 5 23
841 234.78 humidity 90.0 1440 < th dose dependent rect. 3 19
854 234.80 radiation 1.0 1440 < th dose independent rect. 2 21
860 234.81 humidity 80.0 1440 < th dose independent no NA NA
867 234.82 radiation 1.0 1440 < th dose independent no NA NA
870 234.82 radiation 1.0 1440 < th dose independent rect. 5 17
899 234.85 humidity 80.0 1440 > th dose independent rect. 15 23
916 234.88 radiation 1.0 1440 > th dose independent rect. 8 7
960 234.97 humidity 80.0 1440 < th dose independent rect. 16 23
965 234.97 humidity 50.0 1440 > th dose dependent rect. 11 22