BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0133700 Os02g0133700|Os02g0133700
(343 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27170.1 | chr2:11609319-11617064 REVERSE LENGTH=1205 161 5e-40
AT3G24255.1 | chr3:8789471-8793208 FORWARD LENGTH=747 84 2e-16
AT3G47460.1 | chr3:17486765-17493178 FORWARD LENGTH=1172 72 3e-13
AT5G62410.1 | chr5:25056308-25062436 FORWARD LENGTH=1176 69 4e-12
AT5G48600.2 | chr5:19701908-19709091 FORWARD LENGTH=1245 56 3e-08
AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576 48 7e-06
>AT2G27170.1 | chr2:11609319-11617064 REVERSE LENGTH=1205
Length = 1204
Score = 161 bits (407), Expect = 5e-40, Method: Composition-based stats.
Identities = 73/97 (75%), Positives = 88/97 (90%)
Query: 1 MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSED 60
M+IK+V++EGFKSY+E+++TE FS KVN VVGANGSGKSNFFHAIRFVLSD++QNLRSED
Sbjct: 1 MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSED 60
Query: 61 RGALLHEGADISVLSAFVEIVFDNSDNRIPLKKEDLQ 97
R ALLHEGA V+SAFVEIVFDNSDNR P+ KE+++
Sbjct: 61 RHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIR 97
>AT3G24255.1 | chr3:8789471-8793208 FORWARD LENGTH=747
Length = 746
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 16/194 (8%)
Query: 95 DLQPLVDKVARWLPTWKSNQMSSIGRVTMVNAVLSAIPIYLLVAIDAPKWVIKGIDKVRR 154
D PLV+K+ + W + +S GR+ ++++V+ ++ + + A P IK ID +
Sbjct: 41 DYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICS 100
Query: 155 GFLWAGKAQVNGGCCRVAWTKVCSPKDYGGLGVPNLKLMGIALRSRWTWMQRTSLTK-PW 213
FLW+G ++N +VAW+ VC+PKD GGLG+ +LK S W+ T+L W
Sbjct: 101 SFLWSG-PELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG--SFWSISGNTTLGSWMW 157
Query: 214 QGLEIPCSQKELHLVAASTVCQLGNGQTILFWEDNWLQGGTIRAIALSIYDH---VSTRI 270
+ + K L + + NG FW DNW + G + + + H + I
Sbjct: 158 KKI-----LKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRL----IDVTGHRGCIDMGI 208
Query: 271 RKRRTVAEALSNRR 284
+VAEA+ N R
Sbjct: 209 TLHASVAEAVVNHR 222
>AT3G47460.1 | chr3:17486765-17493178 FORWARD LENGTH=1172
Length = 1171
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 1 MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLS-DMFQNLRSE 59
M+IK++ +EGFKSY F P N + G NGSGKSN +I FVL Q +R+
Sbjct: 1 MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 60 DRGALLHEGADISVLSAFVEIVFDNSD-NRIPLKKED 95
+ L+++ + A V + FDNS+ NR PL ED
Sbjct: 61 NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHED 97
>AT5G62410.1 | chr5:25056308-25062436 FORWARD LENGTH=1176
Length = 1175
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 1 MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLS-DMFQNLRSE 59
M+IK++ +EGFKSY F P N + G NGSGKSN +I FVL Q +R+
Sbjct: 1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
Query: 60 DRGALLHEGADISVLSAFVEIVFDNSD-NRIPLKKED 95
+ L+++ + A V + FDNS+ +R PL E+
Sbjct: 61 NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEE 97
>AT5G48600.2 | chr5:19701908-19709091 FORWARD LENGTH=1245
Length = 1244
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 1 MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSED 60
+YIK++V+ FKSY E PF + VVG NGSGKSN A+ FV + +R
Sbjct: 24 LYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNK 83
Query: 61 RGALLHEGADISVL-SAFVEIVFD 83
L+H + L SA V + F+
Sbjct: 84 VSELIHNSTNHQNLDSAGVSVQFE 107
>AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576
Length = 575
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 91/245 (37%), Gaps = 48/245 (19%)
Query: 130 AIPIYLLVAIDAPKWVIKGIDKVRRGFLWAGKAQVNGGCCRVAWTKVCSPKDYGGLGVPN 189
A+P Y + PK V K I V F W K + G + AW + K GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWK-AWDHLSCYKAEGGIGFKD 60
Query: 190 LKLMGIALRSRWTW-------------------MQRTSLTKP--------WQGLEIPCSQ 222
++ +AL + W + L P W+ I SQ
Sbjct: 61 IEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKS--IHASQ 118
Query: 223 KELHLVAASTVCQLGNGQTILFWEDNWLQGGTIRA------IALSIYDHVSTRIRKRRTV 276
+ L A + V GNG+ I+ W WL A + Y VS+ ++ +
Sbjct: 119 EILRQGARAVV---GNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLI 175
Query: 277 AEALSNRRWIKDISGALGTQAILEYLKLWSLIQSVDCSSAEP-DSLSWKWESSGKYTSKS 335
E S R W KD+ L + + LI + DS +W + SSG YT KS
Sbjct: 176 DE--SGREWRKDVIEMLFPEVERK------LIGELRPGGRRILDSYTWDYTSSGDYTVKS 227
Query: 336 AYRAL 340
Y L
Sbjct: 228 GYWVL 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,699,899
Number of extensions: 316340
Number of successful extensions: 849
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 6
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)