Os02g0132200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0132200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.39 | 0.403 | 9.66 | -0.149 | 0.99 | 1.15 | -0.919 | -1.96 | 0.125 | 0.658 | 30.67 | 11 | -- | -- |
| 76.44 | 0.41 | 9.7 | -0.481 | 0.989 | 1.13 | -1.46 | -- | 0.0649 | 0.67 | 28.16 | 59 | -- | -- |
| 75.78 | 0.409 | 9.65 | -0.0206 | 1.03 | 1.02 | -- | -2.52 | 0.159 | 0.902 | 28.7 | 7 | -- | -- |
| 85.05 | 0.43 | 9.69 | -0.425 | 1.04 | 1.1 | -- | -- | 0.0737 | 0.75 | 27.64 | 58 | -- | -- |
| 120.54 | 0.514 | 9.59 | 0.221 | -- | 2.03 | -- | -2.52 | 0.349 | -- | 30 | 3 | -- | -- |
| 94.47 | 0.456 | 9.75 | -0.745 | 1.34 | -- | -1.35 | -- | -0.173 | 1.04 | -- | -- | -- | -- |
| 101.99 | 0.473 | 9.75 | -0.698 | 1.34 | -- | -- | -- | -0.166 | 1.16 | -- | -- | -- | -- |
| 129.17 | 0.532 | 9.64 | -0.197 | -- | 2.03 | -- | -- | 0.235 | -- | 30.14 | 10 | -- | -- |
| 89.33 | 0.44 | 9.68 | -- | 0.996 | 1.26 | -- | -- | 0.142 | 0.665 | 27.7 | 58 | -- | -- |
| 213.28 | 0.682 | 9.73 | -0.646 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 114.82 | 0.501 | 9.73 | -- | 1.33 | -- | -- | -- | -0.0886 | 1.13 | -- | -- | -- | -- |
| 130.13 | 0.533 | 9.63 | -- | -- | 2.09 | -- | -- | 0.266 | -- | 30.14 | 10 | -- | -- |
| 224.3 | 0.699 | 9.71 | -- | -- | -- | -- | -- | -0.0677 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.79 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 3 | 64.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 11 | 64.37 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 17 | 64.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 22 | 64.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 31 | 64.79 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 32 | 64.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 78 | 65.38 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 96 | 65.52 | humidity | 80 | 43200 | < th | dose independent | sin | 9 | NA |
| 105 | 65.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 114 | 65.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 123 | 65.75 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 124 | 65.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 139 | 65.89 | humidity | 80 | 43200 | > th | dose independent | sin | 9 | NA |
| 142 | 65.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 154 | 66.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 155 | 66.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 159 | 66.15 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 160 | 66.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 162 | 66.16 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 163 | 66.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 171 | 66.21 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 182 | 66.28 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 183 | 66.28 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 279 | 66.92 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 321 | 67.38 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 324 | 67.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 339 | 67.54 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 346 | 67.59 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 351 | 67.62 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 371 | 67.74 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 378 | 67.76 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 390 | 67.85 | wind | 3 | 43200 | > th | dose independent | sin | 0 | NA |
| 393 | 67.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 402 | 67.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 18 |
| 411 | 67.95 | wind | 5 | 43200 | < th | dose dependent | sin | 0 | NA |
| 428 | 68.00 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 496 | 68.19 | wind | 3 | 43200 | < th | dose independent | sin | 1 | NA |
| 539 | 68.31 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 543 | 68.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 619 | 68.50 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 646 | 68.54 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 22 |
| 696 | 68.63 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 700 | 68.64 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 731 | 68.69 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 741 | 68.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 755 | 68.72 | humidity | 80 | 43200 | < th | dose dependent | sin | 9 | NA |
| 803 | 68.78 | radiation | 10 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 809 | 68.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 832 | 68.82 | wind | 3 | 43200 | > th | dose independent | no | NA | NA |
| 837 | 68.82 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 857 | 68.85 | wind | 1 | 43200 | > th | dose dependent | sin | 22 | NA |
| 887 | 68.88 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 897 | 68.90 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 916 | 68.92 | wind | 5 | 43200 | < th | dose dependent | no | NA | NA |
| 974 | 68.98 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 995 | 69.01 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 999 | 69.02 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 21 |