BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0132200 Os02g0132200|Os02g0132200
(555 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05240.1 | chr5:1554023-1556230 REVERSE LENGTH=531 209 3e-54
AT2G40630.1 | chr2:16958442-16960942 FORWARD LENGTH=536 197 2e-50
AT5G10110.1 | chr5:3166660-3167938 REVERSE LENGTH=322 56 6e-08
AT5G65120.1 | chr5:26013274-26014504 FORWARD LENGTH=318 49 9e-06
>AT5G05240.1 | chr5:1554023-1556230 REVERSE LENGTH=531
Length = 530
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 221/401 (55%), Gaps = 43/401 (10%)
Query: 182 SECGSTTGAVGESESHRKWREMKQNGFLSSSQGT---------------AVXXXXXXXXX 226
SECGS+ G+V + + + W EMKQNG+LS+ G +
Sbjct: 144 SECGSSNGSVAKRDPMKVWTEMKQNGYLSNPNGGISTTSSSCLISSSHGGIPAPKKRGRK 203
Query: 227 XXXXDDES--KRNTFAQKEQTNKFMKVAAPSGLLSGLNPGIINHVRNSKQVYSIIKAMVH 284
+D + K+ +KE+ ++F ++AAPSGLL+ LNPGIINHVRN KQV SII+ +V
Sbjct: 204 TKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNELNPGIINHVRNKKQVLSIIENIVK 263
Query: 285 SENLEKENQAVHA------SQTGERGREFSEKAQDQRYGGNMMNCHFLMKGSNMPFHQGL 338
SE ++ H+ S G + + + + Y + + L K +
Sbjct: 264 SE---RDAGNYHSTLRHSNSADGSPRKNLGDACRSEFY---QVFQYALPKDMYSMRYYAE 317
Query: 339 PTASQFLPEDGDDLKLQLSSAVTMASDRTCSTSADDFASNHDYMTVLSVKAANVASQWLE 398
A E+ + ++ + A + + + +S D AS+ + +VL+V AA VASQWLE
Sbjct: 318 KCADDEFSEENNTVRSRFQVAGKFSENDSSLSSED--ASDLNSASVLTVNAATVASQWLE 375
Query: 399 LLQQDIRGRLAALKRSKKRVRNALQTELPYLISTEFSYNQENEPSVVHSSDGGSTGKTVP 458
LL QDI+GR++AL+RS+KRVR + ELP+LI EF +QEN+P+++ GG++ +
Sbjct: 376 LLHQDIKGRVSALRRSRKRVRAVVTIELPHLIRKEFPADQENDPTLLL---GGASKASTV 432
Query: 459 EAHVARWRSLFLQMDRTLQEEGMHLENRLKEVQEMQMNCEKGLRYMACEA-----PLVGP 513
+ H +RW +LF Q++ L EE LE+ L +V+ MQ +C++GL++++ + L P
Sbjct: 433 DIHKSRWMTLFKQLEHKLSEEESQLESWLNQVRYMQSHCDEGLQHLSLSSGQNFLQLGMP 492
Query: 514 MAELWKLKNSETPESEWAVQAAAASIYSTCNLVMRTENVSC 554
+ + N+ + + ++AAAASIYSTC+ + EN++C
Sbjct: 493 LDS--RAANALISDKDLVIKAAAASIYSTCSFL--EENITC 529
>AT2G40630.1 | chr2:16958442-16960942 FORWARD LENGTH=536
Length = 535
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 168/486 (34%), Positives = 231/486 (47%), Gaps = 85/486 (17%)
Query: 86 SEDGEPS-LLETGSFLQPEAACLTLGRSSDAAEVNN-----LCDKENIRTDLQPKPDVRH 139
S+D +PS +ET ++L P+A ++ + D V N L + ++TD R
Sbjct: 101 SKDIKPSSTVETRTYL-PKAKSIS---TDDNRRVVNSGKQALLENHTVKTD---DSKCRV 153
Query: 140 VENRMNGAPLGLDLNIVDSSNAAELNPFFPYKKLGQTKVSDPSECGSTTGAVGESESHRK 199
V+N P ++V AAE + P KVS C S G++GES+S R+
Sbjct: 154 VKNISLLKPRETTESVVSQRGAAEPSVSVPVGD----KVSPFQMCSSADGSLGESDSMRR 209
Query: 200 WREMKQNGFLSSSQG-----------TAVXXXXXXXXXXXXXDDES--KRNTFAQKEQ-- 244
WREMK+NGFLS G T V ES K+N +KEQ
Sbjct: 210 WREMKRNGFLSGPLGGVAAPTSTVVTTPVEVPAPKQQKNKRRGGESLKKKNDVPKKEQQL 269
Query: 245 TNKFMKVAAPSGLLSGLNPGIINHVRNSKQVYSIIKAMVHSENLEKENQAVHASQTGERG 304
++F V APSGLL+ LNPGIINHVR KQV SII+A++ S N + + T ER
Sbjct: 270 VDRFANVTAPSGLLTELNPGIINHVRTKKQVCSIIEALIRSSNDD--------ATTRERH 321
Query: 305 REFSEKAQDQRYGGNMMNCHFLMKGSNMPFHQGLPTASQFLPEDGDDLKLQLSSAVTMAS 364
+F N ++ +D L T S
Sbjct: 322 GDF--------------NVRDAIR---------------------EDRALAFKLPSTGVS 346
Query: 365 DRTCSTSADDFASNHDYMTVLSVKAANVASQWLELLQQDIRGRLAALKRSKKRVRNALQT 424
D S + N + T L+V+AA VASQWLE LQQD+ GRL+A++ S+ RV+N L T
Sbjct: 347 DNAISIT------NPEQATSLAVEAATVASQWLEFLQQDLSGRLSAVQDSRNRVQNILTT 400
Query: 425 ELPYLIST-EFSYNQENEPSVVHSSDGG--STGKTVPEAHVARWRSLFLQMDRTLQEEGM 481
ELP L S+ E S NQ N +V ++ G S+ K E H RW + F Q+++ L +E
Sbjct: 401 ELPLLASSRESSSNQANSLEMVTTNTSGDASSDKAATETHQKRWTAKFDQINKALYDEQR 460
Query: 482 HLENRLKEVQEMQMNCEKGLRYMACEAPLVGPMAELWKLKNSETPESEWAVQAAAASIYS 541
LE L +V+EMQ C GLR M E + E+ AVQAAAASI+S
Sbjct: 461 DLERSLNQVKEMQSRCNHGLRQME-EYSPFSSQSSDSSFGKDGNQETSMAVQAAAASIFS 519
Query: 542 TCNLVM 547
TC+ ++
Sbjct: 520 TCSFLL 525
>AT5G10110.1 | chr5:3166660-3167938 REVERSE LENGTH=322
Length = 321
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 396 WLELLQQDIRGRLAALKRSKKRVRNALQTELPYLISTEFSYNQENEPSVVHSSDGGSTGK 455
W +L QD +GRL+A+K+S+K N +Q + ST+F H++ G S
Sbjct: 216 WSDLNYQDSKGRLSAMKKSQKAASNLIQGNVKER-STDF-----------HAT-GNSVSA 262
Query: 456 TVPEAHVARWRSLFLQMDRTLQEEGMHLENRLKEVQEMQMNCEKGL 501
+A+WRSLFL M L EE HL+N +++++ +C+ L
Sbjct: 263 KQESKLMAQWRSLFLSMGDILSEESSHLQNSFVRMKKLRDDCKMDL 308
>AT5G65120.1 | chr5:26013274-26014504 FORWARD LENGTH=318
Length = 317
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 396 WLELLQQDIRGRLAALKRSKKRVRNALQTELPYLISTEFSYNQENEPSVVHSSDGGSTGK 455
W +L QDI+GRL+ LK+S+K +Q N P+ ++ S+ +
Sbjct: 213 WSDLHYQDIKGRLSVLKKSQKEASGLIQ------------RNDRGTPTDIYGSENSNNST 260
Query: 456 TVPEAHVARWRSLFLQMDRTLQEEGMHLENRLKEVQEMQMNCEKGL 501
+ +W SLF M+ L E HL N ++E++ NC+ L
Sbjct: 261 NTDNP-MEQWTSLFRNMEGILARESNHLHNSFVAMKELRENCKIDL 305
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.126 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,233,157
Number of extensions: 450267
Number of successful extensions: 916
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 907
Number of HSP's successfully gapped: 5
Length of query: 555
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 451
Effective length of database: 8,255,305
Effective search space: 3723142555
Effective search space used: 3723142555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)