Os02g0131100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0131100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.59 | 0.284 | 11.6 | -0.0327 | 0.773 | 0.633 | -0.568 | -4.39 | 0.414 | 6.7 | 30.27 | 4364 | -- | -- |
| 37.55 | 0.288 | 11.5 | 0.733 | 0.736 | -0.2 | -0.664 | -- | 0.377 | 6.87 | 30.27 | 4364 | -- | -- |
| 37.39 | 0.285 | 11.6 | -0.0314 | 0.768 | 0.635 | -- | -4.42 | 0.42 | 6.63 | 30.37 | 4363 | -- | -- |
| 38.62 | 0.291 | 11.5 | 0.718 | 0.739 | -0.18 | -- | -- | 0.381 | 6.78 | 30.37 | 4363 | -- | -- |
| 65.47 | 0.379 | 11.5 | 0.582 | -- | -0.115 | -- | -2.57 | 0.382 | -- | 30.37 | 4363 | -- | -- |
| 38.6 | 0.291 | 11.5 | 0.711 | 0.767 | -- | -0.584 | -- | 0.393 | 6.72 | -- | -- | -- | -- |
| 39.45 | 0.294 | 11.5 | 0.701 | 0.766 | -- | -- | -- | 0.394 | 6.64 | -- | -- | -- | -- |
| 66.13 | 0.38 | 11.5 | 0.752 | -- | -0.372 | -- | -- | 0.38 | -- | 30.37 | 4363 | -- | -- |
| 41.28 | 0.299 | 11.6 | -- | 0.772 | 0.525 | -- | -- | 0.134 | 6.78 | 22 | 47520 | -- | -- |
| 70.03 | 0.391 | 11.5 | 0.719 | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
| 52.39 | 0.339 | 11.5 | -- | 0.775 | -- | -- | -- | 0.316 | 6.59 | -- | -- | -- | -- |
| 70.37 | 0.391 | 11.6 | -- | -- | 0.578 | -- | -- | 0.192 | -- | 18.43 | 47520 | -- | -- |
| 83.66 | 0.427 | 11.5 | -- | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.49 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 35.85 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 35.91 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 9 | 6 |
| 7 | 36.01 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 6 | 10 |
| 9 | 36.04 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 13 | 36.10 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 19 | 36.14 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 21 | 36.14 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 11 | 7 |
| 23 | 36.15 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 25 | 36.15 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 29 | 36.17 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 44 | 36.21 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 48 | 36.22 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 2 |
| 56 | 36.23 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 72 | 36.28 | temperature | 30.0 | 90 | > th | dose independent | rect. | 11 | 6 |
| 80 | 36.32 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 82 | 36.32 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 91 | 36.34 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 12 | 7 |
| 92 | 36.34 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 106 | 36.37 | temperature | 30.0 | 270 | > th | dose independent | rect. | 10 | 4 |
| 113 | 36.38 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 135 | 36.41 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 22 |
| 141 | 36.42 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 20 |
| 148 | 36.44 | wind | 1.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 149 | 36.44 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 158 | 36.46 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 167 | 36.47 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 11 | 3 |
| 170 | 36.47 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 175 | 36.48 | wind | 1.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 177 | 36.48 | temperature | 30.0 | 30 | > th | dose independent | rect. | 13 | 5 |
| 215 | 36.49 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 3 |
| 256 | 36.51 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 258 | 36.51 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 11 | 7 |
| 299 | 36.52 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 301 | 36.53 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 339 | 36.54 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 15 |
| 371 | 36.55 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 375 | 36.55 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 410 | 36.57 | temperature | 30.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 413 | 36.57 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 445 | 36.57 | atmosphere | 1015.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 448 | 36.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 458 | 36.58 | temperature | 30.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 472 | 36.59 | wind | 1.0 | 720 | > th | dose independent | rect. | 7 | 16 |
| 494 | 36.60 | humidity | 60.0 | 270 | < th | dose independent | rect. | 11 | 3 |
| 497 | 36.60 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 5 |
| 500 | 36.60 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 10 | 7 |
| 538 | 36.61 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 11 | 4 |
| 553 | 36.61 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 555 | 36.61 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 583 | 36.63 | radiation | 40.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 595 | 36.64 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 605 | 36.64 | temperature | 30.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 658 | 36.66 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 686 | 36.66 | atmosphere | 995.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 696 | 36.66 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 700 | 36.67 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 705 | 36.67 | temperature | 30.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 708 | 36.67 | temperature | 25.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 725 | 36.67 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 12 | 16 |
| 743 | 36.68 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 11 |
| 749 | 36.68 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 752 | 36.68 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 785 | 36.69 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 9 | 10 |
| 786 | 36.69 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 787 | 36.69 | wind | 5.0 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 789 | 36.69 | temperature | 30.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 790 | 36.69 | temperature | 30.0 | 10 | > th | dose dependent | no | NA | NA |
| 791 | 36.69 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 19 | NA |
| 904 | 36.69 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 914 | 36.70 | humidity | 60.0 | 270 | < th | dose independent | rect. | 13 | 1 |
| 927 | 36.70 | wind | 5.0 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 928 | 36.70 | wind | 5.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 934 | 36.70 | wind | 5.0 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 949 | 36.70 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 977 | 36.71 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 1 |