BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0131100 Os02g0131100|AK060381
         (480 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40450.1  | chr5:16184799-16195513 REVERSE LENGTH=2890          52   5e-07

>AT5G40450.1 | chr5:16184799-16195513 REVERSE LENGTH=2890
          Length = 2889

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 2/40 (5%)

Query: 441  SHKK-HNILSGVGSKVKHQLAKVKKAIIGKPGH-TKSESP 478
            +HKK H ILSGVGSKVKH ++KVKK + GK  H TK  SP
Sbjct: 2849 THKKSHGILSGVGSKVKHSISKVKKVLTGKSSHTTKPSSP 2888



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.299    0.119    0.313 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,020,361
Number of extensions: 513247
Number of successful extensions: 3062
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2896
Number of HSP's successfully gapped: 41
Length of query: 480
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 378
Effective length of database: 8,310,137
Effective search space: 3141231786
Effective search space used: 3141231786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 114 (48.5 bits)