Os02g0127000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0127000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.83 | 0.204 | 11.2 | -0.449 | 0.868 | 1.01 | -0.135 | -1.4 | -0.106 | 6.32 | 7.212 | 541 | -- | -- |
| 20.03 | 0.208 | 11.2 | -0.218 | 0.876 | 0.998 | 0.178 | -- | -0.0439 | 6.34 | 8.794 | 540 | -- | -- |
| 18.87 | 0.202 | 11.2 | -0.436 | 0.867 | 1.01 | -- | -1.3 | -0.102 | 6.36 | 6.417 | 551 | -- | -- |
| 20.1 | 0.209 | 11.2 | -0.212 | 0.88 | 0.993 | -- | -- | -0.0426 | 6.26 | 8.872 | 515 | -- | -- |
| 38.52 | 0.289 | 11.2 | -0.475 | -- | 0.751 | -- | -0.845 | -0.0934 | -- | 4.67 | 2747 | -- | -- |
| 31.46 | 0.263 | 11.2 | 0.0161 | 0.617 | -- | -0.0491 | -- | 0.106 | 6.03 | -- | -- | -- | -- |
| 31.47 | 0.263 | 11.2 | 0.0157 | 0.617 | -- | -- | -- | 0.106 | 6.04 | -- | -- | -- | -- |
| 39.23 | 0.292 | 11.2 | -0.276 | -- | 0.759 | -- | -- | -0.0377 | -- | 10.95 | 2750 | -- | -- |
| 21.15 | 0.214 | 11.2 | -- | 0.855 | 0.894 | -- | -- | -0.00562 | 6.21 | 11.11 | 490 | -- | -- |
| 51.17 | 0.334 | 11.2 | 0.0336 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 31.48 | 0.262 | 11.2 | -- | 0.617 | -- | -- | -- | 0.104 | 6.04 | -- | -- | -- | -- |
| 40.89 | 0.298 | 11.2 | -- | -- | 0.644 | -- | -- | 0.0087 | -- | 14.1 | 2740 | -- | -- |
| 51.2 | 0.334 | 11.2 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 3 | 17.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 20 | 18.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 24 | 18.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 25 | 18.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 54 | 18.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 88 | 18.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 105 | 18.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 107 | 18.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 109 | 18.86 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 110 | 18.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 126 | 18.89 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 128 | 18.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 139 | 18.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 11 |
| 145 | 18.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 527 | 19.19 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 560 | 19.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 580 | 19.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 948 | 19.46 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |