BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0127000 Os02g0127000|AK105450
(226 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04830.1 | chr3:1326289-1329132 FORWARD LENGTH=304 322 1e-88
AT5G28220.1 | chr5:10190626-10193054 REVERSE LENGTH=317 313 3e-86
>AT3G04830.1 | chr3:1326289-1329132 FORWARD LENGTH=304
Length = 303
Score = 322 bits (824), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 151/229 (65%), Positives = 185/229 (80%), Gaps = 3/229 (1%)
Query: 1 MDCQRLDVAKDCIGVLSKQFPGSMRVGRLEALLFEAKGEWTDAERAYALILENNPFDQIV 60
MDCQ L VA++CI VL K+FP S RVG+LEALL EAKG W +AE+AY +LE+NP DQ++
Sbjct: 75 MDCQSLGVAQNCIKVLKKKFPESKRVGKLEALLLEAKGMWEEAEKAYTSLLEDNPLDQVI 134
Query: 61 HKRKIAIAKAQGDMALAVEYLNKYLELFMADHDAWRELAETYVALQMYKQAAFCYEELIL 120
HKRK+A+AKAQG +LA+E+LNKYLE+FMADHDAWRELAE YV+LQMYKQAAFCYEELIL
Sbjct: 135 HKRKVAMAKAQGKSSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194
Query: 121 AQPTVPLYHLAYAEVLYTMGGLENLQTARKYYASTIQLTGGKNTRALFGVCLCSSAINQL 180
QPT+PLYHLAYA+VLYT+GGLENL ARKYYA+TI LTGGK+TRAL G+CLC SAI Q+
Sbjct: 195 TQPTLPLYHLAYADVLYTIGGLENLIAARKYYAATIDLTGGKSTRALLGICLCGSAIAQI 254
Query: 181 TKGRNKXXXXXXX---XXXXXXXXXKDYKQRAPSKEALITSLLKNMKLS 226
+KGRNK ++YKQ+AP+K L+TS L+N+K++
Sbjct: 255 SKGRNKEDKDMAAPELQSLAATALEREYKQKAPAKLNLLTSALRNLKIA 303
>AT5G28220.1 | chr5:10190626-10193054 REVERSE LENGTH=317
Length = 316
Score = 313 bits (803), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 150/228 (65%), Positives = 179/228 (78%), Gaps = 4/228 (1%)
Query: 1 MDCQRLDVAKDCIGVLSKQFPGSMRVGRLEALLFEAKGEWTDAERAYALILENNPFDQIV 60
MDCQ L VA+ CI L +FPGS RVGRLEALL EAKG W +AE AYA +LE+NP DQ +
Sbjct: 88 MDCQCLGVAQSCIKALQTKFPGSKRVGRLEALLLEAKGLWGEAEEAYASLLEDNPLDQAI 147
Query: 61 HKRKIAIAKAQGDMALAVEYLNKYLELFMADHDAWRELAETYVALQMYKQAAFCYEELIL 120
HKR++AI+KA G ++A+E LNKYLELFMADHDAWRELAE Y++LQMYKQAAFCYEELIL
Sbjct: 148 HKRRVAISKALGKPSIAIELLNKYLELFMADHDAWRELAELYLSLQMYKQAAFCYEELIL 207
Query: 121 AQPTVPLYHLAYAEVLYTMGGLENLQTARKYYASTIQLTGGKNTRALFGVCLCSSAINQL 180
+QPTVPLYHLAYAEVLYT+GG+EN+ +ARKYYA+T+ LTGGKNTRAL G+CLC+SAI QL
Sbjct: 208 SQPTVPLYHLAYAEVLYTIGGVENIISARKYYAATVDLTGGKNTRALLGICLCASAIAQL 267
Query: 181 TKGRNKXXXXXXXX----XXXXXXXXKDYKQRAPSKEALITSLLKNMK 224
+KGRNK K+YKQ+AP K LI+S L+ +K
Sbjct: 268 SKGRNKEDKDATAAPELHSLAAAAVEKEYKQKAPDKLQLISSALRILK 315
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,064,954
Number of extensions: 139851
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,502,049
Effective search space: 1113768419
Effective search space used: 1113768419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)