Os02g0126600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0126600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.8 | 0.656 | 9.14 | -4.17 | 0.255 | 1.2 | 1 | -8.47 | -0.126 | 21 | 26.19 | 5548 | -- | -- |
| 204.81 | 0.667 | 8.92 | -2.31 | 0.237 | 0.943 | 1.05 | -- | 0.107 | 20.4 | 12.6 | 8485 | -- | -- |
| 197.59 | 0.655 | 9.13 | -4.17 | 0.278 | 1.24 | -- | -8.74 | -0.0433 | 21 | 27.18 | 5566 | -- | -- |
| 208.19 | 0.672 | 8.92 | -2.37 | 0.247 | 0.97 | -- | -- | 0.102 | 21 | 11.58 | 8496 | -- | -- |
| 201.08 | 0.66 | 9.15 | -4.44 | -- | 1.41 | -- | -9.81 | -0.0724 | -- | 27.32 | 5503 | -- | -- |
| 219.91 | 0.695 | 8.86 | -1.81 | 0.261 | -- | 1.02 | -- | 0.381 | 20.9 | -- | -- | -- | -- |
| 223.37 | 0.7 | 8.86 | -1.85 | 0.257 | -- | -- | -- | 0.38 | 21.5 | -- | -- | -- | -- |
| 211.52 | 0.677 | 8.92 | -2.36 | -- | 0.977 | -- | -- | 0.0941 | -- | 9.25 | 8261 | -- | -- |
| 267.28 | 0.761 | 8.74 | -- | 0.271 | -1.09 | -- | -- | 0.912 | 21.6 | -50.81 | 47520 | -- | -- |
| 227.28 | 0.704 | 8.85 | -1.85 | -- | -- | -- | -- | 0.379 | -- | -- | -- | -- | -- |
| 313.37 | 0.828 | 8.81 | -- | 0.257 | -- | -- | -- | 0.586 | 21 | -- | -- | -- | -- |
| 240.55 | 0.722 | 8.83 | -- | -- | -1.16 | -- | -- | 0.491 | -- | 35.07 | 47520 | -- | -- |
| 317.17 | 0.831 | 8.81 | -- | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 2 | 184.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 3 | 184.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 4 | 184.87 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 5 | 184.90 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 6 | 184.91 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 10 | 184.96 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 23 | 185.08 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 31 | 185.16 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 37 | 185.22 | temperature | 25.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 50 | 185.33 | temperature | 25.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 64 | 185.41 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 70 | 185.44 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 2 | 21 |
| 76 | 185.46 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 4 | 19 |
| 79 | 185.46 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 106 | 185.53 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 119 | 185.55 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 123 | 185.55 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 124 | 185.55 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 142 | 185.58 | temperature | 25.0 | 43200 | > th | dose independent | no | NA | NA |
| 148 | 185.58 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 193 | 185.63 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 230 | 185.67 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 231 | 185.67 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 239 | 185.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 240 | 185.69 | temperature | 25.0 | 43200 | < th | dose independent | no | NA | NA |
| 268 | 185.71 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 347 | 185.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 371 | 185.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 419 | 185.96 | temperature | 25.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 457 | 186.04 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 458 | 186.05 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 486 | 186.10 | temperature | 25.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 493 | 186.11 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 494 | 186.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 500 | 186.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 507 | 186.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 582 | 186.24 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 587 | 186.26 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 591 | 186.26 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 595 | 186.28 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 633 | 186.35 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 642 | 186.38 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 646 | 186.38 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 670 | 186.43 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 844 | 186.80 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 860 | 186.84 | temperature | 20.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 883 | 186.87 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 886 | 186.88 | temperature | 25.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 924 | 186.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 930 | 186.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 965 | 186.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 968 | 186.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 12 |
| 985 | 186.97 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 4 | 18 |