BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0126600 Os02g0126600|AK063220
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37445.1  | chr4:17604144-17604918 REVERSE LENGTH=162           91   3e-19
AT1G64850.1  | chr1:24096548-24097574 REVERSE LENGTH=163           49   2e-06

>AT4G37445.1 | chr4:17604144-17604918 REVERSE LENGTH=162
          Length = 161

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 93/153 (60%), Gaps = 10/153 (6%)

Query: 6   SAFGLPGWSSIPT-------GQVYDQYFKDKKTDSFEAFHVAYVEFCKDFNTVLPGQDFD 58
           S+ G  G    PT       G +Y Q F  K  ++F+ FHVA ++   +FN+ LPG+ FD
Sbjct: 3   SSMGFLGKGVPPTQMMNMVMGSLYKQ-FTQKAINNFDDFHVAVLDIFNNFNSALPGRHFD 61

Query: 59  TPSLEKIQKFYDDTWKLINEDQEKKKAFMDYIRDNVKEAAVDDSLFIMAGLAAPAGAIVL 118
            P+ ++I+  +   WK   +++EKKK F++++  +VK + +DD   I  G+ +P  A+  
Sbjct: 62  FPTPDQIKVCFA-RWKEAKDEEEKKKLFIEFMSKSVKPSKLDDVTMI-TGIVSPPAAMAA 119

Query: 119 KRTGQSIPQLKRLDLLPNVLFVPLFTLAAIMGA 151
           KR G+++PQLK + L+P+V+FVP  T+ AI+ A
Sbjct: 120 KRAGENVPQLKLIKLIPDVIFVPTVTILAIVSA 152



>AT1G64850.1 | chr1:24096548-24097574 REVERSE LENGTH=163
          Length = 162

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 1   MGLAFSAFGLPGWSSIPTGQVYDQYFKDKKTDS------FEAFHVAYVEFCKDFNTVLPG 54
           MG  F+      W       + D+ F   K  +      FE  ++A +    D N  LPG
Sbjct: 1   MGQVFNKLRGKEWRHKQVQAICDRVFDRFKMQTGRANLTFEELYIAVLLVYNDINKRLPG 60

Query: 55  QDFDTPSLEKIQKFYDDTWKLINEDQE-KKKAFMDYIRDNVKEA-AVDDSLFIMAGLAAP 112
             FD PS + +     D    IN D E  ++ F+ +I     E   V     I+A + AP
Sbjct: 61  PHFDPPSKDLVNSIMTDC--DINLDGELDREEFVKFIEQITAETFNVVSQGLIIALIVAP 118

Query: 113 AGAIVLKRTGQSIPQL-KRLDLLPNVLFVPLFTLAAI 148
             AI  K+  + +P + K +  LP  ++  L TLA +
Sbjct: 119 TVAIATKKATEGVPGVGKVVQKLPTSIYASLVTLAVM 155



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,610,426
Number of extensions: 151878
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)