FiT-DB / Search/ Help/ Sample detail

Os02g0124700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.9 (0.0141) R2 : 0.0117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0691 (0.0297) R2dN8 : 0.0151 R2N8 : 0.0117
σ : 0.266
deviance : 32.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.47 0.228 9.89 -0.0221 0.135 0.394 -0.169 0.249 0.0931 8.67 69.19 688 -- --
23.54 0.226 9.89 -0.00846 0.14 0.392 -0.0781 -- 0.0947 8.58 68.75 694 -- --
23.53 0.226 9.89 -0.0159 0.135 0.396 -- 0.11 0.0953 8.55 69.16 693 -- --
23.55 0.226 9.89 -0.00723 0.135 0.397 -- -- 0.0962 8.48 69.08 697 -- --
24.02 0.228 9.89 -0.0115 -- 0.532 -- 0.0752 0.108 -- 69.06 694 -- --
25.77 0.238 9.89 -0.00701 0.347 -- -0.0233 -- 0.0645 8.22 -- -- -- --
25.77 0.238 9.89 -0.0077 0.347 -- -- -- 0.0645 8.22 -- -- -- --
24.03 0.228 9.89 -0.00675 -- 0.533 -- -- 0.108 -- 69 694 -- --
23.55 0.226 9.89 -- 0.135 0.4 -- -- 0.0963 8.49 69 696 -- --
32.43 0.266 9.9 -0.00512 -- -- -- -- 0.0685 -- -- -- -- --
25.77 0.237 9.89 -- 0.347 -- -- -- 0.0654 8.22 -- -- -- --
24.04 0.228 9.89 -- -- 0.533 -- -- 0.109 -- 69 694 -- --
32.43 0.266 9.9 -- -- -- -- -- 0.0691 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.40 humidity 50.0 90 > th dose dependent rect. 5 21
4 22.61 atmosphere 1005.0 270 > th dose independent rect. 24 3
5 22.61 atmosphere 1005.0 90 > th dose independent rect. 24 5
13 22.83 atmosphere 1005.0 10 > th dose independent rect. 24 6
22 22.90 humidity 60.0 270 > th dose dependent rect. 3 21
23 22.91 radiation 10.0 14400 < th dose dependent rect. 20 7
28 22.94 temperature 25.0 90 > th dose independent rect. 16 13
32 22.97 temperature 25.0 720 > th dose dependent rect. 16 3
33 22.97 temperature 25.0 720 > th dose dependent rect. 16 8
36 22.98 wind 3.0 30 < th dose dependent rect. 2 3
39 22.99 radiation 1.0 270 < th dose independent rect. 4 20
42 23.00 radiation 1.0 720 < th dose independent rect. 14 10
43 23.00 humidity 60.0 30 > th dose independent rect. 5 21
44 23.00 atmosphere 995.0 270 > th dose dependent rect. 24 3
55 23.03 radiation 40.0 4320 < th dose dependent rect. 3 2
65 23.06 temperature 25.0 30 < th dose independent rect. 2 3
67 23.06 temperature 20.0 270 > th dose independent rect. 4 20
75 23.08 atmosphere 1000.0 90 > th dose dependent rect. 24 5
83 23.11 wind 1.0 270 > th dose independent rect. 24 3
99 23.13 radiation 1.0 720 > th dose independent rect. 16 2
102 23.13 humidity 60.0 90 > th dose independent rect. 5 10
115 23.16 wind 9.0 14400 > th dose independent rect. 10 2
117 23.16 temperature 20.0 90 > th dose independent rect. 5 10
118 23.16 radiation 1.0 720 > th dose independent rect. 16 13
121 23.17 precipitation 0.1 30 < th dose independent rect. 2 3
122 23.17 wind 9.0 14400 > th dose independent rect. 7 5
127 23.17 wind 7.0 14400 > th dose dependent rect. 10 2
129 23.17 precipitation 0.1 30 < th dose dependent rect. 2 3
132 23.17 radiation 1.0 270 < th dose dependent rect. 4 20
137 23.18 atmosphere 995.0 90 > th dose dependent rect. 2 3
138 23.19 wind 3.0 30 < th dose independent rect. 2 3
155 23.20 wind 1.0 270 > th dose independent rect. 23 5
159 23.21 wind 7.0 14400 < th dose independent rect. 11 1
179 23.23 atmosphere 1000.0 10 > th dose dependent rect. 24 6
183 23.24 temperature 20.0 30 > th dose independent rect. 5 21
190 23.25 wind 7.0 90 < th dose independent rect. 15 14
192 23.25 radiation 1.0 720 < th dose independent rect. 7 17
199 23.26 humidity 70.0 1440 > th dose independent rect. 11 1
201 23.26 humidity 80.0 90 > th dose independent rect. 5 21
204 23.26 humidity 50.0 720 > th dose dependent rect. 19 5
209 23.27 radiation 10.0 1440 < th dose independent rect. 3 2
212 23.27 temperature 25.0 720 > th dose dependent sin 13 NA
214 23.27 wind 5.0 30 < th dose dependent rect. 24 5
217 23.27 radiation 1.0 720 < th dose dependent rect. 14 10
221 23.28 wind 5.0 270 < th dose independent rect. 24 3
225 23.28 radiation 10.0 14400 < th dose dependent rect. 22 5
234 23.29 temperature 20.0 90 > th dose independent rect. 5 8
235 23.29 wind 9.0 14400 < th dose independent rect. 3 10
242 23.29 radiation 10.0 14400 < th dose dependent rect. 20 5
245 23.30 temperature 10.0 30 > th dose independent rect. 2 3
248 23.30 humidity 50.0 30 > th dose independent rect. 2 3
252 23.30 atmosphere 1010.0 30 < th dose independent rect. 2 3
254 23.30 radiation 1.0 30 < th dose independent rect. 2 3
260 23.30 humidity 60.0 30 > th dose independent rect. 5 19
262 23.30 temperature 10.0 30 > th dose independent rect. 5 21
265 23.30 humidity 50.0 30 > th dose dependent rect. 2 3
266 23.30 radiation 10.0 30 < th dose dependent rect. 2 3
270 23.30 radiation 1.0 720 < th dose dependent rect. 11 13
284 23.31 wind 9.0 90 < th dose independent rect. 5 21
286 23.31 temperature 30.0 90 < th dose dependent rect. 2 3
290 23.31 wind 7.0 14400 > th dose dependent rect. 5 8
293 23.32 humidity 70.0 1440 > th dose independent rect. 10 5
311 23.32 radiation 40.0 270 < th dose dependent rect. 4 20
346 23.33 humidity 70.0 720 > th dose dependent rect. 19 22
350 23.34 radiation 20.0 14400 < th dose independent rect. 3 3
407 23.37 humidity 70.0 720 > th dose dependent rect. 10 21
411 23.38 precipitation 0.1 270 < th dose independent rect. 24 3
416 23.38 precipitation 0.1 270 < th dose dependent rect. 24 3
436 23.39 radiation 40.0 4320 < th dose dependent rect. 1 4
453 23.40 temperature 20.0 270 > th dose independent rect. 3 8
460 23.40 humidity 80.0 1440 > th dose independent rect. 1 16
461 23.40 humidity 80.0 1440 < th dose independent rect. 24 17
474 23.41 temperature 10.0 270 > th dose independent rect. 24 3
478 23.41 humidity 50.0 270 > th dose independent rect. 24 3
482 23.41 atmosphere 1010.0 270 < th dose independent rect. 24 3
484 23.41 radiation 1.0 270 < th dose independent rect. 24 3
494 23.41 precipitation 0.1 90 < th dose independent rect. 15 14
499 23.41 temperature 10.0 270 > th dose independent rect. 3 21
501 23.41 radiation 1.0 270 < th dose dependent rect. 24 3
511 23.41 precipitation 0.1 90 < th dose dependent rect. 15 14
560 23.44 wind 9.0 1440 < th dose independent rect. 3 2
561 23.44 temperature 10.0 1440 > th dose independent rect. 3 2
564 23.44 temperature 30.0 1440 < th dose independent rect. 3 2
568 23.44 humidity 50.0 1440 > th dose independent rect. 3 2
577 23.44 atmosphere 995.0 1440 > th dose independent rect. 3 2
598 23.44 temperature 10.0 1440 > th dose independent rect. 5 22
649 23.45 humidity 70.0 1440 > th dose dependent rect. 11 2
660 23.46 temperature 25.0 270 > th dose independent sin 14 NA
662 23.46 wind 9.0 270 < th dose independent rect. 3 21
666 23.46 temperature 10.0 30 > th dose dependent rect. 2 3
688 23.47 atmosphere 995.0 30 > th dose independent rect. 5 21
696 23.47 humidity 70.0 720 > th dose dependent rect. 10 14
702 23.47 humidity 90.0 720 < th dose dependent rect. 16 20
706 23.48 temperature 25.0 720 > th dose independent rect. 16 3
719 23.48 radiation 10.0 14400 < th dose dependent rect. 22 3
721 23.48 humidity 50.0 90 > th dose dependent rect. 5 10
723 23.48 humidity 50.0 720 > th dose dependent rect. 19 12
750 23.50 humidity 70.0 1440 > th dose independent rect. 13 1
751 23.50 precipitation 0.1 14400 > th dose independent rect. 17 1
770 23.50 wind 7.0 90 < th dose independent rect. 5 10
781 23.50 humidity 70.0 720 > th dose dependent no NA NA
786 23.50 humidity 70.0 1440 > th dose dependent rect. 10 4
789 23.50 temperature 10.0 270 > th dose dependent rect. 3 8
794 23.50 radiation 1.0 720 < th dose dependent rect. 7 17
799 23.50 wind 9.0 30 < th dose dependent rect. 5 21
825 23.51 humidity 80.0 720 < th dose independent rect. 15 21
826 23.51 radiation 40.0 270 < th dose independent rect. 3 21
827 23.51 precipitation 0.1 30 < th dose independent rect. 5 21
828 23.51 precipitation 0.1 14400 > th dose dependent rect. 17 1
835 23.51 temperature 15.0 90 > th dose dependent rect. 5 6
837 23.51 wind 9.0 90 < th dose dependent rect. 5 8
838 23.51 humidity 50.0 10 > th dose dependent rect. 16 10
842 23.51 precipitation 0.1 30 < th dose dependent rect. 5 21
872 23.52 radiation 1.0 720 > th dose independent rect. 7 22
876 23.52 radiation 40.0 270 < th dose dependent rect. 14 10
877 23.52 humidity 70.0 1440 > th dose dependent rect. 2 14
888 23.53 radiation 1.0 720 > th dose independent rect. 7 12
907 23.53 humidity 80.0 720 > th dose independent rect. 1 23
908 23.53 humidity 80.0 720 < th dose independent rect. 13 23
913 23.53 temperature 25.0 90 > th dose dependent rect. 17 11
937 23.54 wind 7.0 90 < th dose independent rect. 5 8
951 23.54 humidity 80.0 720 < th dose independent rect. 15 23
970 23.55 humidity 80.0 1440 < th dose independent sin 3 NA
971 23.55 humidity 80.0 720 < th dose independent rect. 16 3
988 23.55 radiation 30.0 270 < th dose independent rect. 14 10