BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0124700 Os02g0124700|AK064457
         (474 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00800.1  | chr4:337114-345581 REVERSE LENGTH=1914             406   e-113

>AT4G00800.1 | chr4:337114-345581 REVERSE LENGTH=1914
          Length = 1913

 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/469 (46%), Positives = 311/469 (66%), Gaps = 18/469 (3%)

Query: 1    MTDEIVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGVTDAAAFLQERVGDVG 60
            +TD+++ELY+ELLC+YE +SVLKFLETFDSYR+E CL LC +YG+ DAAAFL ERVGD G
Sbjct: 1438 VTDDMIELYVELLCKYEPKSVLKFLETFDSYRVEHCLRLCQEYGIVDAAAFLLERVGDAG 1497

Query: 61   SALALILAGLDEKINLFISSVENAFS--GIASKSISEIEQPDIVLKMSEAHPVLDALRAA 118
            SAL+L L+GL+EK      +VE   S   + +   + +E     L++ E H +   L+A 
Sbjct: 1498 SALSLTLSGLNEKYVELEIAVECLMSEMKLGASEGASLEHFSSALELKEVHDIQGVLQAC 1557

Query: 119  IGLCQRNSQRLNPEESQSLWFQLLDSFSEPLKKLYGS-KDVNGKGVRSNGSETSNRQPKD 177
            IGLCQRN+ RLNPEES+ LWF+ LD+F EPL + Y   K+ +G    S G ++  R   +
Sbjct: 1558 IGLCQRNTPRLNPEESEILWFRFLDTFCEPLMESYREPKNTDGINKGSLGVKSLERHVNE 1617

Query: 178  KGFSRKTRIS-AYQRCLNALRRVFSQFVGEIIEAMAGHIPLPAIMGKLLSDNRSQEFGDF 236
               + K RI  +     + LR++ SQF+ EI+E M G++ LP IM KLLSDN +QEFGDF
Sbjct: 1618 SDVAIKWRIPRSDTAATHILRKLISQFIKEIVEGMIGYVRLPTIMTKLLSDNGTQEFGDF 1677

Query: 237  KLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGLAPQTFVCCICNCSLSK 296
            KL I  ML  Y +E+RIL+TAKS+IEDD+FY+++LLK+G  HG AP++ +CCIC+C L+K
Sbjct: 1678 KLTILGMLGTYGFERRILDTAKSLIEDDTFYSMNLLKKGASHGYAPRSLLCCICSCPLTK 1737

Query: 297  ESAVSAIRVFSCGHATHLQCESEQSKSSN-----RDSKDGCPICLS--TSNTQAQNKSPI 349
              +   +RVF+CGHATHLQCE  ++++S        S  GCP+C++  TS +  + KS  
Sbjct: 1738 TFSALRVRVFNCGHATHLQCEPSENETSTSASSIHVSSSGCPVCMTKKTSKSSLKGKSFY 1797

Query: 350  SENGLGKHFGAESEVSH-GTYHTHETDHVDRSRGLQQMSRYEILNHLQRPQSL-HIETVP 407
             + GL     + +  S   + ++HE +  D S   QQ+SR+EIL +LQ+ Q L  IE++P
Sbjct: 1798 RDYGLISTVSSNAGSSQRASPYSHENEMSDHSHN-QQLSRFEILTNLQKDQRLVQIESLP 1856

Query: 408  PLRLSPPAIYHEKIQKRTT-TMGESSKHSVRTEKPQRIWQMKEPRSKRS 455
             LRL+PPA+YHEK+ + +  T GESS    +  KP +  Q K+P++K S
Sbjct: 1857 RLRLAPPAVYHEKVSRLSGFTPGESSG---KDTKPVKTGQGKKPKTKGS 1902



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,928,454
Number of extensions: 404220
Number of successful extensions: 1320
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1315
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 372
Effective length of database: 8,310,137
Effective search space: 3091370964
Effective search space used: 3091370964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)