Os02g0122200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0122200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.7 | 0.328 | 10.6 | -0.249 | 1.1 | -0.689 | 0.171 | -0.295 | -0.404 | 8.62 | 20.8 | 1673 | -- | -- |
| 48.49 | 0.324 | 10.6 | -0.219 | 1.09 | -0.585 | 0.278 | -- | -0.374 | 8.65 | 21.77 | 1718 | -- | -- |
| 48.73 | 0.325 | 10.6 | -0.239 | 1.1 | -0.667 | -- | -0.249 | -0.4 | 8.61 | 21.1 | 1655 | -- | -- |
| 48.68 | 0.325 | 10.6 | -0.212 | 1.09 | -0.579 | -- | -- | -0.373 | 8.61 | 21.79 | 1718 | -- | -- |
| 89.78 | 0.441 | 10.6 | 0.0504 | -- | -0.759 | -- | 0.058 | -0.288 | -- | 25.2 | 646 | -- | -- |
| 59.13 | 0.36 | 10.6 | -0.475 | 1.1 | -- | 0.236 | -- | -0.554 | 8.62 | -- | -- | -- | -- |
| 59.31 | 0.361 | 10.6 | -0.467 | 1.1 | -- | -- | -- | -0.554 | 8.6 | -- | -- | -- | -- |
| 86.41 | 0.433 | 10.6 | -0.19 | -- | -0.921 | -- | -- | -0.204 | -- | 25.28 | 642 | -- | -- |
| 49.78 | 0.329 | 10.6 | -- | 1.1 | -0.614 | -- | -- | -0.342 | 8.57 | 21.71 | 1732 | -- | -- |
| 127.84 | 0.528 | 10.7 | -0.464 | -- | -- | -- | -- | -0.545 | -- | -- | -- | -- | -- |
| 65.06 | 0.377 | 10.6 | -- | 1.1 | -- | -- | -- | -0.502 | 8.63 | -- | -- | -- | -- |
| 87.32 | 0.435 | 10.6 | -- | -- | -0.949 | -- | -- | -0.173 | -- | 25.2 | 642 | -- | -- |
| 133.52 | 0.539 | 10.6 | -- | -- | -- | -- | -- | -0.493 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 45.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 16 | 46.68 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 22 | 46.80 | radiation | 40 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 29 | 46.93 | radiation | 40 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 35 | 47.00 | radiation | 40 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 52 | 47.22 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 60 | 47.30 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 61 | 47.31 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 63 | 47.31 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 68 | 47.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 71 | 47.35 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 73 | 47.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 79 | 47.38 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 82 | 47.39 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 90 | 47.42 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 94 | 47.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 97 | 47.44 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 129 | 47.48 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 134 | 47.49 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 145 | 47.53 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 149 | 47.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 151 | 47.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 152 | 47.55 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 153 | 47.55 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 163 | 47.57 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 8 |
| 164 | 47.57 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 173 | 47.60 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 174 | 47.60 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 177 | 47.60 | humidity | 60 | 43200 | < th | dose dependent | sin | 3 | NA |
| 184 | 47.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 191 | 47.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 216 | 47.65 | humidity | 60 | 43200 | < th | dose dependent | sin | 10 | NA |
| 223 | 47.66 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 244 | 47.68 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 245 | 47.68 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 267 | 47.71 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 280 | 47.71 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 284 | 47.71 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 296 | 47.72 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 298 | 47.73 | radiation | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 303 | 47.73 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 346 | 47.75 | radiation | 40 | 43200 | > th | dose independent | sin | 22 | NA |
| 357 | 47.76 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 363 | 47.76 | radiation | 40 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 690 | 47.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 698 | 47.84 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 16 |
| 718 | 47.86 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 762 | 47.87 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 787 | 47.87 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 830 | 47.89 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 837 | 47.90 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 838 | 47.90 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 885 | 47.91 | radiation | 10 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 891 | 47.92 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 926 | 47.93 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 927 | 47.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 942 | 47.93 | radiation | 10 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 944 | 47.93 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 950 | 47.94 | radiation | 10 | 43200 | > th | dose dependent | sin | 1 | NA |
| 963 | 47.94 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 9 |
| 987 | 47.94 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 998 | 47.95 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 1000 | 47.95 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 4 |